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mussa

Can't synchronize with repository "(default)" (Unsupported version control system "git": Can't find an appropriate component, maybe the corresponding plugin was not enabled? Look in the Trac log for more information. Feature Requests / Bugs. We be plundering the High Sequence Seas For the hidden Treasures of Conservation". Mussa's core algorithm is an N-way version of. 2-way comparative sequence analysis software (which is a part of the. The saved paths are then displayed in an interactive viewer. Update...

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Can't synchronize with repository (default) (Unsupported version control system git: Can't find an appropriate component, maybe the corresponding plugin was not enabled? Look in the Trac log for more information. Feature Requests / Bugs. We be plundering the High Sequence Seas For the hidden Treasures of Conservation. Mussa's core algorithm is an N-way version of. 2-way comparative sequence analysis software (which is a part of the. The saved paths are then displayed in an interactive viewer. Update...
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mussa | mussa.caltech.edu Reviews

https://mussa.caltech.edu

Can't synchronize with repository "(default)" (Unsupported version control system "git": Can't find an appropriate component, maybe the corresponding plugin was not enabled? Look in the Trac log for more information. Feature Requests / Bugs. We be plundering the High Sequence Seas For the hidden Treasures of Conservation". Mussa's core algorithm is an N-way version of. 2-way comparative sequence analysis software (which is a part of the. The saved paths are then displayed in an interactive viewer. Update...

INTERNAL PAGES

mussa.caltech.edu mussa.caltech.edu
1

/ – mussa

http://mussa.caltech.edu/mussa/browser

Update mussa to build on ubuntu 10.04 with qt 4.6.2 boost 1.40.0.1 I. Some minor corrections which fixed the problem with displaying the. Mupa for test case this is used to verify that the mussa tosses a. Mussa Window Icon * Added mussa.png icon. * Added mussa.png to qrc. Windows Installer updated for Mussa 1.1.0: * Qt 4.5.3 * New Qt. Update mussa to build on ubuntu 10.04 with qt 4.6.2 boost 1.40.0.1 I. Update mussa to build on ubuntu 10.04 with qt 4.6.2 boost 1.40.0.1 I. Project @ 13] mussa015.

2

Roadmap – mussa

http://mussa.caltech.edu/mussa/roadmap

Hide milestones with no due date. Nov 8, 2006, 12:00:00 AM). Total number of tickets: 35. Add some useability enhancements flushed out by the 1.0 release of mussa. May 1, 2007, 12:00:00 AM). Total number of tickets: 12. Standing on our heads. Total number of tickets: 29. Holding area for near term mussa ideas. Total number of tickets: 8. Documentation updates for Mussagl 1.1. From future import docs. Total number of tickets: 2. For documentations tickets that don't have a specific release milestone.

3

FeatureNotes – mussa

http://mussa.caltech.edu/mussa/wiki/FeatureNotes

Documentation for a miscellaneous selection of Mussa Features, especially new ones not covered by the User guide. Using embedded python interpreter. Last modified on Dec 5, 2006, 5:47:43 PM. Download in other formats:. Powered by Trac 1.0.2. Visit the Trac open source project at. Http:/ trac.edgewall.com/.

4

Timeline – mussa

http://mussa.caltech.edu/mussa/timeline

Larr; Previous Period. Next Period →. Tickets opened and closed. For information about the timeline view. Download in other formats:. Powered by Trac 1.0.2. Visit the Trac open source project at. Http:/ trac.edgewall.com/.

5

PerformanceNotes – mussa

http://mussa.caltech.edu/mussa/wiki/PerformanceNotes

An experiment using a 7 way comparison run on an amd64 2.2 GHz. Running with 1 sequence repeat masked. Diane@brisby: /proj/mussa analyses/mck 1repeat/ChCoDoHuMoOpRa$ time /proj/mussa/build64/qui/mussagl - no-gui - run mck w20 t14.mupa. Real 7m44.508s user 7m43.182s sys 0m0.307s 04/13/06 01:07:58: Modified by diane. Running with all repeat masked diane@brisby: /proj/mussa analyses/mck repeatmasked/ChCoDoHuMoOpRa$ time /proj/mussa/build64/qui/mussagl - no-gui - run mck w20 t14.mupa. On a 2.0 GHz x86 Mac.

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cistematic.caltech.edu cistematic.caltech.edu

HelpContents - Wold Lab

http://cistematic.caltech.edu/wiki/HelpContents

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. You will find here the help pages for the wiki system itself. If you would like a quick overview of MoinMoin. S syntax, have a look at HelpOnMoinWikiSyntax. If you are looking for something for a presentation, look at WikiCourse. Is help for users who are new to a MoinMoin. How to configure and maintain a MoinMoin. Is a list of all available help pages. Fulltext search is available on FindPage. Because the pages from Moin.

cistematic.caltech.edu cistematic.caltech.edu

RNASeq - Wold Lab

http://cistematic.caltech.edu/wiki/RNASeq

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Mapping and Quantifying Mammalian Transcriptomes by RNA-Seq. Ali Mortazavi, Brian Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold. This is the page of the underlying data and code for the analysis of the paper above, which has been published in Nature Methods in 2008. While the paper focuses on mouse tissues, we have since used the same code in C elegans and human cell lines with great success. Recently, an error i...

cistematic.caltech.edu cistematic.caltech.edu

Documentation - Wold Lab

http://cistematic.caltech.edu/wiki/Documentation

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Locally relevant information about services we are hosting. WoldlabWiki: Documentation (last edited 2014-01-09 03:43:16 by diane.

cistematic.caltech.edu cistematic.caltech.edu

RecentChanges - Wold Lab

http://cistematic.caltech.edu/wiki/RecentChanges

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. WikiWiki means fast in Hawaiian. Marks older pages that have at least one backup version stored (click for an author diff). Marks pages edited since you set your bookmark (click for a bookmark diff). Marks pages created since you set your bookmark, and were not edited after creation. An editing conflict happened, please resolve it by merging both versions of the problematic paragraphs together.

cistematic.caltech.edu cistematic.caltech.edu

FindPage - Wold Lab

http://cistematic.caltech.edu/wiki/FindPage

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Containing all the following terms. Containing one or more of the following terms. Not containing the following terms. Last modified since (e.g. 2 weeks before). C - text/x-c hdr. CPP - text/x-c hdr. H - text/x-c hdr. Apk - application/vnd.android.package-archive. Atom - application/atom xml. Atomcat - application/atomcat xml. Atomsrv - application/atomserv xml. C - text/x-c hdr. C -objdump - text/x-cpp-objdump. Mxu - vide...

cistematic.caltech.edu cistematic.caltech.edu

compclust - Wold Lab

http://cistematic.caltech.edu/wiki/compclust

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Mailing List and Contact. The latest version of CompClust 1.2 is now available. Version 1.2 Includes a substantial revision of our principal component analysis (PCA) interpretation software (publication forthcoming). Interested researchers can use our web-based application, CompClustWeb. To interactively review the results of our analysis of the GNF human GNF human gene expression data. Python setup.py install. Upcoming pl...

cistematic.caltech.edu cistematic.caltech.edu

Protocols - Wold Lab

http://cistematic.caltech.edu/wiki/Protocols

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Direct labeling of mouse genomic DNA for microarray hybridization using the Klenow fragment of E. coli DNA polymerase I and Cy3 dCTP. - Version 1.0, December 29, 2003. Brian Williams and Richele Gwirtz. Indirect labeling of mouse genomic DNA using Klenow and aminoallyl-dUTP - Version 1.0, October 7, 2004. Brian Williams and Richele Gwirtz. This is a detailed version of the protocol published in .Genomic DNA as a genera...

cistematic.caltech.edu cistematic.caltech.edu

Welcome - Wold Lab

http://cistematic.caltech.edu/wiki/Welcome

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Welcome to the Wold Lab. WoldlabWiki: Welcome (last edited 2016-07-11 23:48:18 by diane.

woldlab.caltech.edu woldlab.caltech.edu

diane - Wold Lab

http://woldlab.caltech.edu/wiki/diane

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. I am one of the Software Developers / Linux System Administrators in the Wold Lab. WoldlabWiki: diane (last edited 2013-06-05 23:47:59 by diane.

woldlab.caltech.edu woldlab.caltech.edu

Protocols - Wold Lab

http://woldlab.caltech.edu/wiki/Protocols

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Direct labeling of mouse genomic DNA for microarray hybridization using the Klenow fragment of E. coli DNA polymerase I and Cy3 dCTP. - Version 1.0, December 29, 2003. Brian Williams and Richele Gwirtz. Indirect labeling of mouse genomic DNA using Klenow and aminoallyl-dUTP - Version 1.0, October 7, 2004. Brian Williams and Richele Gwirtz. This is a detailed version of the protocol published in .Genomic DNA as a genera...

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mussa

Can't synchronize with repository "(default)" (Unsupported version control system "git": Can't find an appropriate component, maybe the corresponding plugin was not enabled? Look in the Trac log for more information. Feature Requests / Bugs. We be plundering the High Sequence Seas For the hidden Treasures of Conservation". Mussa's core algorithm is an N-way version of. 2-way comparative sequence analysis software (which is a part of the. The saved paths are then displayed in an interactive viewer. Update...

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