cistematic.caltech.edu

Cistematic - Wold Lab

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Cistematic 3.0 install page. A platform for cis-regulatory element analysis within and across multiple genomes. One of the more useful APIs in Cistematic involved wrapping genes, annotations, and genomic sequences that are stored in a sqlite database. It is on top of this foundation that we have built additional platforms, such as ChIPSeqMini, and ERANGE. Cistematic currently runs on Linux and Macintosh; it also runs under...

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Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Cistematic 3.0 install page. A platform for cis-regulatory element analysis within and across multiple genomes. One of the more useful APIs in Cistematic involved wrapping genes, annotations, and genomic sequences that are stored in a sqlite database. It is on top of this foundation that we have built additional platforms, such as ChIPSeqMini, and ERANGE. Cistematic currently runs on Linux and Macintosh; it also runs under...

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Cistematic - Wold Lab | cistematic.caltech.edu Reviews

https://cistematic.caltech.edu

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Cistematic 3.0 install page. A platform for cis-regulatory element analysis within and across multiple genomes. One of the more useful APIs in Cistematic involved wrapping genes, annotations, and genomic sequences that are stored in a sqlite database. It is on top of this foundation that we have built additional platforms, such as ChIPSeqMini, and ERANGE. Cistematic currently runs on Linux and Macintosh; it also runs under...

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cistematic.caltech.edu

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Cistematic - Wold Lab

http://cistematic.caltech.edu/wiki/Cistematic

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Cistematic 3.0 install page. A platform for cis-regulatory element analysis within and across multiple genomes. One of the more useful APIs in Cistematic involved wrapping genes, annotations, and genomic sequences that are stored in a sqlite database. It is on top of this foundation that we have built additional platforms, such as ChIPSeqMini, and ERANGE. Cistematic currently runs on Linux and Macintosh; it also runs under...

2

Protocols - Wold Lab

http://cistematic.caltech.edu/wiki/Protocols

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Direct labeling of mouse genomic DNA for microarray hybridization using the Klenow fragment of E. coli DNA polymerase I and Cy3 dCTP. - Version 1.0, December 29, 2003. Brian Williams and Richele Gwirtz. Indirect labeling of mouse genomic DNA using Klenow and aminoallyl-dUTP - Version 1.0, October 7, 2004. Brian Williams and Richele Gwirtz. This is a detailed version of the protocol published in .Genomic DNA as a genera...

3

Welcome - Wold Lab

http://cistematic.caltech.edu/wiki/Welcome

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Welcome to the Wold Lab. WoldlabWiki: Welcome (last edited 2016-07-11 23:48:18 by diane.

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Documentation - Wold Lab

http://cistematic.caltech.edu/wiki/Documentation

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Locally relevant information about services we are hosting. WoldlabWiki: Documentation (last edited 2014-01-09 03:43:16 by diane.

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RecentChanges - Wold Lab

http://cistematic.caltech.edu/wiki/RecentChanges

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. WikiWiki means fast in Hawaiian. Marks older pages that have at least one backup version stored (click for an author diff). Marks pages edited since you set your bookmark (click for a bookmark diff). Marks pages created since you set your bookmark, and were not edited after creation. An editing conflict happened, please resolve it by merging both versions of the problematic paragraphs together.

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Software - Wold Lab

http://woldlab.caltech.edu/wiki/Software

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. A package of python scripts designed to analyze ultra-high-througphut sequencing data from the Illumina/Solexa platform for RNA-seq and ChIP-seq in metazoan genomes. The RNA-seq portion of ERANGE is described in our Nature Methods paper Mapping and quantifying mammalian transcriptomes by RNA-Seq (Mortazavi, 2008). ERANGE is built on top of Cistematic. Project, but can be used independently. These include a disk based m...

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Cistematic - Wold Lab

Caltech Biology Bioinformatics Lab. ChIP Seq Peak Finder. Revert to this revision. Cistematic 3.0 install page. A platform for cis-regulatory element analysis within and across multiple genomes. One of the more useful APIs in Cistematic involved wrapping genes, annotations, and genomic sequences that are stored in a sqlite database. It is on top of this foundation that we have built additional platforms, such as ChIPSeqMini, and ERANGE. Cistematic currently runs on Linux and Macintosh; it also runs under...

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