wormflux.umassmed.edu wormflux.umassmed.edu

wormflux.umassmed.edu

WormFlux: online metabolic network model of C. elegans; genome-scale reconstruction of the worm metabolism and flux balance analysis.

A database of metabolic reactions, genes, and metabolites in Caenorhabditis elegans that forms the basis for a mathematical metabolic network model.

http://wormflux.umassmed.edu/

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WormFlux: online metabolic network model of C. elegans; genome-scale reconstruction of the worm metabolism and flux balance analysis. | wormflux.umassmed.edu Reviews
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A database of metabolic reactions, genes, and metabolites in Caenorhabditis elegans that forms the basis for a mathematical metabolic network model.
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WormFlux: online metabolic network model of C. elegans; genome-scale reconstruction of the worm metabolism and flux balance analysis. | wormflux.umassmed.edu Reviews

https://wormflux.umassmed.edu

A database of metabolic reactions, genes, and metabolites in Caenorhabditis elegans that forms the basis for a mathematical metabolic network model.

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wormflux.umassmed.edu wormflux.umassmed.edu
1

WormFlux: mechanistic analysis of C. elegans metabolism

http://wormflux.umassmed.edu/fba.php

Walhout Lab web page:. Metabolic Network Modeling of C. elegans. When finished, the F. Nalysis tool will calculate a steady state flux. Distribution in the reaction network under user-defined (constrained) conditions. You need an academic account to use FBA. Please go to the sign-in. Page for details and contact information.

2

WormFlux: mechanistic analysis of C. elegans metabolism

http://wormflux.umassmed.edu/explore.php

Enter a search word or phrase. Optionally select an appropriate field. And hit the search button. Or press enter. This search engine is NOT. A single character. E.g. Covers both trehalose phosphatase. Of which, only the latter fits the nomenclature used in this database. Any number of characters. E.g. Brings all genes from trehalase family; coenzyme*A. Number of genes . Number of enzymes . Number of reactions . Number of metabolites . Number of pathways . Cytosol, Mitochondria, Extracellular space. React...

3

WormFlux: mechanistic analysis of C. elegans metabolism

http://wormflux.umassmed.edu/fva.php

Walhout Lab web page:. Metabolic Network Modeling of C. elegans. When finished, the F. Nalysis tool will allow sensitivity and robustness analyses by deriving the relationship between user-defined fluxes. You need an academic account to use FVA. Please go to the sign-in. Page for details and contact information.

4

WormFlux: mechanistic analysis of C. elegans metabolism

http://wormflux.umassmed.edu/expression.php

Walhout Lab web page:. Metabolic Network Modeling of C. elegans. When finished, the this tool will allow integration of gene or protein expression data. With the metabolic network. You need an academic account to use theintegration tool. Please go to the sign-in. Page for details and contact information.

5

WormFlux: mechanistic analysis of C. elegans metabolism

http://wormflux.umassmed.edu/help.html

Walhout Lab web page:. Metabolic Network Modeling of C. elegans. Finding your way within WormFlux is really easy:. Starting with the Network. Button in the left-hand menu, follow blue. Text in reaction tables to reach information by hovering or clicking or both. Get specific help using blue question marks (? Which display short instructions or other useful information upon hovering. To search a particular item (gene, metabolite, etc.), use the search function that is present in Network. WormFlux database...

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Walhout Lab web page:. May 25, 2016. ICEL1273 is published in Cell Systems. Click. May 24, 2016. The search engine of WormFlux is updated. Partial hits are shown and wild characters are allowed. May 19, 2016. May 19, 2016. The first official version of WormFlux web site is launched. February 15, 2016. Beta version of WormFlux web site is launched for a test ride. November 15, 2015. Metabolic Network Modeling of C. elegans. The current metabolic network model is iCEL1273. Enter a search word or phrase.

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