supfam.mbu.iisc.ernet.in

SUPFAM database

Evolutionary relationships between structure and sequence families. How to use the site. This database consists of clusters of potentially related homologous protein domain families, with and without three-dimensional structural information, forming superfamilies. The present release (Release 6.0) of SUPFAM uses homologous families in Pfam (Version 27.0) and SCOP (version 1.75) which are examples of sequence -alignment and structure classification databases respectively. New Features of SUPFAM web-site.

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SUPFAM database | supfam.mbu.iisc.ernet.in Reviews

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Evolutionary relationships between structure and sequence families. How to use the site. This database consists of clusters of potentially related homologous protein domain families, with and without three-dimensional structural information, forming superfamilies. The present release (Release 6.0) of SUPFAM uses homologous families in Pfam (Version 27.0) and SCOP (version 1.75) which are examples of sequence -alignment and structure classification databases respectively. New Features of SUPFAM web-site.

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SUPFAM database | supfam.mbu.iisc.ernet.in Reviews

https://supfam.mbu.iisc.ernet.in

Evolutionary relationships between structure and sequence families. How to use the site. This database consists of clusters of potentially related homologous protein domain families, with and without three-dimensional structural information, forming superfamilies. The present release (Release 6.0) of SUPFAM uses homologous families in Pfam (Version 27.0) and SCOP (version 1.75) which are examples of sequence -alignment and structure classification databases respectively. New Features of SUPFAM web-site.

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supfam.mbu.iisc.ernet.in

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SUPFAM database

http://supfam.mbu.iisc.ernet.in/index.html

Evolutionary relationships between structure and sequence families. How to use the site. This database consists of clusters of potentially related homologous protein domain families, with and without three-dimensional structural information, forming superfamilies. The present release (Release 6.0) of SUPFAM uses homologous families in Pfam (Version 27.0) and SCOP (version 1.75) which are examples of sequence -alignment and structure classification databases respectively. New Features of SUPFAM web-site.

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pauling.mbu.iisc.ac.in

N S Lab Useful links

http://pauling.mbu.iisc.ac.in/links.html

Proteins : Structure, Function and Evolutionary Group. NS LABPAGE SEARCH ENGINE. The universal protein resource. Consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated). Integrated Resources of Proteins Domains and Functional Sites. Database of protein families and domains. Structural and Functional Annotation of Protein Families. Protein families db (HMM derived) [Mirrors at JFRC (USA). CCBB (South Korea) Institute, UK. Protein Motif fingerprint db. Biomolecula...

scop.berkeley.edu

SCOPe 2.05: Structural Classification of Proteins — extended

http://scop.berkeley.edu/resources/ver=2.05

ASTRAL Sequences and Subsets. Parseable Files and Software. Online resources of potential interest to SCOPe users. Prototype of a new structural classification of proteins. Structural alignments for proteins with non-trivial relationships ( SISYPHUS. Hidden Markov Model library for SCOP. Structural similarity search of older version of SCOP. Using SSM (now PDBeFold). Combinatorial Extension ( CE. Method for structural comparison. Pairwise and multiple alignments of SCOP. Sequence similarity search of SCOP.

nslab.mbu.iisc.ernet.in

N S Lab Useful links

http://nslab.mbu.iisc.ernet.in/links.html

Proteins : Structure, Function and Evolutionary Group. NS LABPAGE SEARCH ENGINE. The universal protein resource. Consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated). Integrated Resources of Proteins Domains and Functional Sites. Database of protein families and domains. Structural and Functional Annotation of Protein Families. Protein families db (HMM derived) [Mirrors at JFRC (USA). CCBB (South Korea) Institute, UK. Protein Motif fingerprint db. Biomolecula...

nslab.mbu.iisc.ernet.in

N S Lab Resources

http://nslab.mbu.iisc.ernet.in/resources.html

Proteins : Structure, Function and Evolutionary Group. The Databases and Servers developed in our lab:. A database of superfamily relationships between Pfam seqeunce families. Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Pandit SB, Bhadra R, Gowri VS, Balaji S, Anand B, O.Krishnadev, V. S. Gowri, C. Sairam Swamy, Vaishnavi R., R. Sowdhamini and N.Srinivasan. SUPFAM v2.1 Webstats. Krupa A, Abhinandan K R., Anamika Krishanpal, Juliette Martin, and N.Sri...This ...

pauling.mbu.iisc.ac.in

N S Lab Resources

http://pauling.mbu.iisc.ac.in/resources.html

Proteins : Structure, Function and Evolutionary Group. The Databases and Servers developed in our lab:. A database of superfamily relationships between Pfam seqeunce families. Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Pandit SB, Bhadra R, Gowri VS, Balaji S, Anand B, O.Krishnadev, V. S. Gowri, C. Sairam Swamy, Vaishnavi R., R. Sowdhamini and N.Srinivasan. SUPFAM v2.1 Webstats. Krupa A, Abhinandan K R., Anamika Krishanpal, Juliette Martin, and N.Sri...This ...

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supfam.cs.bris.ac.uk

SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms

SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes. The SUPERFAMILY annotation is based on a collection of hidden Markov models. Which represent structural protein domains at the SCOP. Superfamily level. A superfamily groups together domains which have an evolutionary relationship. The annotation is produced by scanning protein sequences from over 2,478 completely sequenced genomes. Against the hidden Markov models. Submit sequences for SCOP classification.

supfam.mbu.iisc.ernet.in

SUPFAM database

Evolutionary relationships between structure and sequence families. How to use the site. This database consists of clusters of potentially related homologous protein domain families, with and without three-dimensional structural information, forming superfamilies. The present release (Release 6.0) of SUPFAM uses homologous families in Pfam (Version 27.0) and SCOP (version 1.75) which are examples of sequence -alignment and structure classification databases respectively. New Features of SUPFAM web-site.

supfam.org

SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms

SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes. The SUPERFAMILY annotation is based on a collection of hidden Markov models. Which represent structural protein domains at the SCOP. Superfamily level. A superfamily groups together domains which have an evolutionary relationship. The annotation is produced by scanning protein sequences from over 2,478 completely sequenced genomes. Against the hidden Markov models. Submit sequences for SCOP classification.

supfam2.cs.bris.ac.uk

SUPERFAMILY database of structural and functional protein annotations for all completely sequenced organisms

SUPERFAMILY is currently undergoing maintenence. We will be back very soon, please check again later. Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure.". Please send feedback, comments or questions to superfamily@cs.bris.ac.uk.

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Sup Family, LLC. Nebraska is a great place to call home.

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