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Welcome to the Single Cell Analysis Program – Transcriptome Website | SCAP-T

Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. Data Portal User Guide. Apply for Data Access. Read more to get an overview of SCAP-T data. Apply for Data Access. Instructions on how to apply for SCAP-T Data. Access SCAP-T data via the SCAP-T Data Portal. Access the protocols used for processing the SCAP-T samples. Welcome to the Single Cell Analysis Program Transcriptome Website. This initiative is part of the Single Cell Analysis Program (SCAP). University of Southern California.

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Welcome to the Single Cell Analysis Program – Transcriptome Website | SCAP-T | scap-t.org Reviews
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Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. Data Portal User Guide. Apply for Data Access. Read more to get an overview of SCAP-T data. Apply for Data Access. Instructions on how to apply for SCAP-T Data. Access SCAP-T data via the SCAP-T Data Portal. Access the protocols used for processing the SCAP-T samples. Welcome to the Single Cell Analysis Program Transcriptome Website. This initiative is part of the Single Cell Analysis Program (SCAP). University of Southern California.
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Welcome to the Single Cell Analysis Program – Transcriptome Website | SCAP-T | scap-t.org Reviews

https://scap-t.org

Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. Data Portal User Guide. Apply for Data Access. Read more to get an overview of SCAP-T data. Apply for Data Access. Instructions on how to apply for SCAP-T Data. Access SCAP-T data via the SCAP-T Data Portal. Access the protocols used for processing the SCAP-T samples. Welcome to the Single Cell Analysis Program Transcriptome Website. This initiative is part of the Single Cell Analysis Program (SCAP). University of Southern California.

INTERNAL PAGES

scap-t.org scap-t.org
1

RNA Seq QC Metrics | SCAP-T

http://www.scap-t.org/content/rna-seq-qc-metrics

Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. SCAP-T Q and A. RNA Seq QC Metrics. First Data Freeze, Feb 2015.

2

Protocols | SCAP-T

http://www.scap-t.org/content/protocols-0

Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. SCAP-T Q and A. USC Cell Collection Protocol. USC Ephys Solutions Protocol. USC LibraryPrep cDNASynthesis Protocol. USC Organotypic Slice Culture Protocol. The NGS analysis of the SCAP-T samples is carried out by PennSCAP-T pipeline. Click here. To access the user guide that describes how the SCAP-T samples were processed. The PennSCAP-T pipeline version that has been used to process the SCAP-T samples can be downloaded here.

3

Apply for Data Access | SCAP-T

http://www.scap-t.org/content/apply-data-access-1

Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. SCAP-T Q and A. Apply for Data Access. The following is an overview of the steps required to submit an application for the SCAP-T data:. 1 All applications need to be submitted to dbGaP through the dbGaP Authorized Access web page. For instructions on how to request dbGaP data please view the dbGaP Request Procedures (PDF). 2 The dbGaP dataset ID for SCAP-T is phs000833.v3.p1. To go to our project website on dbGaP.

4

Links | SCAP-T

http://www.scap-t.org/content/links-0

Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. SCAP-T Q and A. Doi: http:/ dx.doi.org/10.1126/science.aaf1204. Dueck H, Khaladkar M, Kim TK, Spaethling JM, Francis C, Suresh S, Fisher SA, Seale P, Beck SG, Bartfai T, Kuhn B, Eberwine J, and Kim J "Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation". Genome Biology 16:122 (2015). Doi: http:/ dx.doi.org/10.1186/s13059-015-0683-4. Doi: http:/ dx.doi.org/10.1038/nmeth.2804.

5

Data Portal User Guide | SCAP-T

http://www.scap-t.org/node/12

Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. SCAP-T Q and A. Data Portal User Guide. SCAP-T Data Portal User Guide will be available soon. 2015 University of Pennsylvania.

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Welcome to the Single Cell Analysis Program – Transcriptome Website | SCAP-T

Single Cell Analysis Program Transcriptome Project. RNA Seq QC Metrics. Data Portal User Guide. Apply for Data Access. Read more to get an overview of SCAP-T data. Apply for Data Access. Instructions on how to apply for SCAP-T Data. Access SCAP-T data via the SCAP-T Data Portal. Access the protocols used for processing the SCAP-T samples. Welcome to the Single Cell Analysis Program Transcriptome Website. This initiative is part of the Single Cell Analysis Program (SCAP). University of Southern California.

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