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School of Computer Science. Application of the Dynamic Regulatory Events Miner (DREM) to study amino acid starvation response in yeast. S Navlakha and Z. Bar-Joseph. Distributed Information Processing in Biological and Computational Systems. COMMUNICATIONS OF THE ACM (CACM). 58 (1), Pages 94-102, 2015. Video interview with Saket for this paper. Cover page story of the CACM January 2015 issue. S Navlakha, C. Faloutsos and Z. Bar-Joseph. MASSEXODUS: Modeling evolving networks in adversarial environments.

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Systems Biology Group - Carnegie Mellon University | Welcome | sb.cs.cmu.edu Reviews

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School of Computer Science. Application of the Dynamic Regulatory Events Miner (DREM) to study amino acid starvation response in yeast. S Navlakha and Z. Bar-Joseph. Distributed Information Processing in Biological and Computational Systems. COMMUNICATIONS OF THE ACM (CACM). 58 (1), Pages 94-102, 2015. Video interview with Saket for this paper. Cover page story of the CACM January 2015 issue. S Navlakha, C. Faloutsos and Z. Bar-Joseph. MASSEXODUS: Modeling evolving networks in adversarial environments.

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Systems Biology Group - Carnegie Mellon University | Welcome | sb.cs.cmu.edu Reviews

https://sb.cs.cmu.edu

School of Computer Science. Application of the Dynamic Regulatory Events Miner (DREM) to study amino acid starvation response in yeast. S Navlakha and Z. Bar-Joseph. Distributed Information Processing in Biological and Computational Systems. COMMUNICATIONS OF THE ACM (CACM). 58 (1), Pages 94-102, 2015. Video interview with Saket for this paper. Cover page story of the CACM January 2015 issue. S Navlakha, C. Faloutsos and Z. Bar-Joseph. MASSEXODUS: Modeling evolving networks in adversarial environments.

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Systems Biology Group - Carnegie Mellon University | Welcome

http://sb.cs.cmu.edu/Software

School of Computer Science. Dynamic Regulatory Events Miner (DREM). Dynamic Regulatory Events Miner (DREM). Short Time-series Expression Miner (STEM). Short Time-series Expression Miner (STEM). ContRep and DiffExp for continuous representation and differentially expressed genes in time series expression data. The ContRep and DiffExp programs are matlab implemations of methods for continuous represenation of time series expriession datasets and for identifying differentially expressed genes in time series...

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Systems Biology Group - Carnegie Mellon University | Welcome

http://sb.cs.cmu.edu/People

School of Computer Science. We are working on several exciting projects in the general area of systems biology and time series expression analysis. Most of our work is in collaboration with leading biological labs. Many of the computational tools we develop are publicly available and some are currently used by hundreds of researchers around the world. We are looking for new individuals to join our group. Specifically:. Applications are due in the Fall. Please email Ziv Bar-Joseph. PhD student, CBD. Sabri...

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Systems Biology Group - Carnegie Mellon University | Welcome

http://sb.cs.cmu.edu/Publications

School of Computer Science. E Sefer, M. Kleyman and Z. Bar-Joseph. Tradeoffs between Dense and Replicate Sampling Strategies for High-Throughput Time Series Experiments. M Ruffalo and Z. Bar-Joseph. Genome-wide predictions of miRNA regulation by transcription factors. Bioinformatics (Proceedings of the 15th European Conference on Computational Biology, ECCB). To appear, 2016. MH Schulz and Ziv Bar-Joseph. Probabilistic models for error correction of non-uniform sequencing data. To appear, 2016. S Chandra...

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Systems Biology Group - Carnegie Mellon University | Welcome

http://sb.cs.cmu.edu/News

School of Computer Science. Neuroscience-based algorithms make for better networks. We have been working on for the last 5 years. The work has been highlighted by a CMU press release. A press release from the Salk Institute. And a few other venues (for example, Tech Times. Ercument Cicek accepts new faculty position. Ercument, who is a postdoc in our group since 2013 (also a Lane fellow co-advised by Kathryn Roeder) has accepted a faculty position in the Computer Science department at Bilkent University.

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Systems Biology Group - Carnegie Mellon University | Welcome

School of Computer Science. Application of the Dynamic Regulatory Events Miner (DREM) to study amino acid starvation response in yeast. S Navlakha and Z. Bar-Joseph. Distributed Information Processing in Biological and Computational Systems. COMMUNICATIONS OF THE ACM (CACM). 58 (1), Pages 94-102, 2015. Video interview with Saket for this paper. Cover page story of the CACM January 2015 issue. S Navlakha, C. Faloutsos and Z. Bar-Joseph. MASSEXODUS: Modeling evolving networks in adversarial environments.

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