blog.metagenomics.anl.gov
Downloads « mg-rast
http://blog.metagenomics.anl.gov/howto/downloads
This page is being retired and its content has been transferred to Appendix A of the MG-RAST user manual. URL: ftp:/ ftp.metagenomics.anl.gov/data/manual/mg-rast-manual.pdf]. All completed MG-RAST datasets have a page where you can download the files produced by the different stages of the analysis. Datasets which have been made public have links to an ftp site at the top of this page where you can download additional information. The files listed below are available from this example download page.
blog.metagenomics.anl.gov
mg-rast
http://blog.metagenomics.anl.gov/page/2
MG-RAST 3.3 release notes [December 12, 2012]. December 13th, 2012 by mark. The database underlying the MG-RAST analyses has been completely revamped and now uses a completely new schema running on new hardware. The analyses results for all existing metagenomes in MG-RAST were ported to the new database and all code was modified to use the new schema. Misc changes and bug fixes. Comments Off on MG-RAST 3.3 release notes [December 12, 2012]. MG-RAST 3.2.5 release notes [November 2, 2012]. MetaZen made ava...
blog.metagenomics.anl.gov
MG-RAST 3.2.5 release notes [November 2, 2012] « mg-rast
http://blog.metagenomics.anl.gov/2012/11/14/mg-rast-3-2-5-release-notes-november-2-2012
MG-RAST 3.2.4 release notes [October 2012]. MG-RAST 3.3 release notes [December 12, 2012]. MG-RAST 3.2.5 release notes [November 2, 2012]. High resolution images are now being displayed scaled to 800 800 pixels, the raw image size has not been changed. LCA tree dsplay modified for display when multiple datasets selected. The download page was modified to make it simpler to use and the download mechanism was changed to make downloads of large files more efficient. Misc changes and bug fixes.
blog.metagenomics.anl.gov
MG-RAST 3.3 release notes [December 12, 2012] « mg-rast
http://blog.metagenomics.anl.gov/2012/12/13/mg-rast-3-3-release-notes-december-12-2012
MG-RAST 3.2.5 release notes [November 2, 2012]. MG-RAST v3 tech-report and manual available. MG-RAST 3.3 release notes [December 12, 2012]. The database underlying the MG-RAST analyses has been completely revamped and now uses a completely new schema running on new hardware. The analyses results for all existing metagenomes in MG-RAST were ported to the new database and all code was modified to use the new schema. Misc changes and bug fixes. Feed Both comments and pings are currently closed.
blog.metagenomics.anl.gov
MG-RAST v3.2 FAQ « mg-rast
http://blog.metagenomics.anl.gov/mg-rast-v3-2-faq
MG-RAST v3.2 FAQ. This page is being retired and its content has been transferred to Chapter 5 of the MG-RAST user manual. URL: ftp:/ ftp.metagenomics.anl.gov/data/manual/mg-rast-manual.pdf]. Frequently Asked Questions about MG-RAST (v3.2). What kinds of data sets does MG-RAST analyze? What annotations does MG-RAST display? Where can I find version 3.1.2? What type of sequences should I upload? What type of sequence files should I NOT upload? How do I prepare my metadata for upload? How should I link to ...
blog.metagenomics.anl.gov
Metadata in MG-RAST « mg-rast
http://blog.metagenomics.anl.gov/metadata-in-mg-rast
This page is being retired and its content has been transferred to Section 4.3.4 of the MG-RAST user manual. URL: ftp:/ ftp.metagenomics.anl.gov/data/manual/mg-rast-manual.pdf]. MG-RAST has implemented the use of Minimum Information about any (X) Sequence. Developed by the Genomic Standards Consortium. In addition to the minimal checklists, more detailed data can be captured in optional environmental packages. The MG-RAST metadata spreadsheet template. Below we show the template tab for project and the r...
blog.metagenomics.anl.gov
MG-RAST blog « mg-rast
http://blog.metagenomics.anl.gov/howto
The blog entries have been superseded by the MG-RAST manual. Ftp:/ ftp.metagenomics.anl.gov/data/manual/mg-rast-manual.pdf. We are in the process of migrating all blog information to the manual, and this should be treated as containing the most up-to-date information about MG-RAST. Please check the manual first and then refer to the blog if you are not able to find the answer to your question(s). MGRAST offers a wide range of tools and options to analyze, browse and compare metagenomic data sets.
blog.metagenomics.anl.gov
Exporting data to QIIME from MG-RAST « mg-rast
http://blog.metagenomics.anl.gov/howto/exporting-to-qiime
Exporting data to QIIME from MG-RAST. This page is being retired and its content has been transferred to Section 2.4.1 of the MG-RAST user manual. URL: ftp:/ ftp.metagenomics.anl.gov/data/manual/mg-rast-manual.pdf]. MG-RAST can export abundance profiles to QIIME for both species abundance and functional category abundance. Http:/ www.qiime.org/. Accessing the QIIME compatible data exports:. QIIME Export is available through the Metagenomic Analysis Page. A note about parameters:. QIIME is developed by th...
blog.metagenomics.anl.gov
MG-RAST newsletter, September 2014 « mg-rast
http://blog.metagenomics.anl.gov/2014/09/17/mg-rast-newsletter-september-2014
MG-RAST data migration, September 2, 2014. MG-RAST newsletter, September 2014. Request for letter of support/testimonials. The MG-RAST team is applying for funding to support continued development on MG-RAST and to improve several aspects of the system. In particular, we need to update and improve the underlying data integration which has not changed significantly in the last five years. The funding will also be used to develop and upgrade the user interface. Click here to start. Thank you for your help,.
blog.metagenomics.anl.gov
MG-RAST data migration, September 2, 2014 « mg-rast
http://blog.metagenomics.anl.gov/2014/09/02/mg-rast-data-migration-september-2-2014
MG-RAST Newsletter, June 2014. MG-RAST newsletter, September 2014. MG-RAST data migration, September 2, 2014. MG-RAST is moving from using a traditional file system to store data to an object management system SHOCK (https:/ github.com/MG-RAST/Shock). The data involved includes but is not limited to sequence files, intermediate analyses pipeline outputs and annotation products. We thank you for your patience and understanding. You can follow any responses to this entry through the RSS 2.0.