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Proteome Quality Index

Assess the quality of my proteome. Download a filtered list of proteomes. Upload a custom PQI Metric. Upload a custom Metric. PQI is measure of proteome quality available from a comprehensive database of downloadable proteomes. Completely sequenced genomes for which there is an available set of protein sequences (the proteome) are given a 5-star rating supported by 11 different metrics of quality. Take me to the Proteomes! Proteomes, each with quality determined by up to 11. Add your own data. Please cit...

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Proteome Quality Index | pqi-list.org Reviews

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Assess the quality of my proteome. Download a filtered list of proteomes. Upload a custom PQI Metric. Upload a custom Metric. PQI is measure of proteome quality available from a comprehensive database of downloadable proteomes. Completely sequenced genomes for which there is an available set of protein sequences (the proteome) are given a 5-star rating supported by 11 different metrics of quality. Take me to the Proteomes! Proteomes, each with quality determined by up to 11. Add your own data. Please cit...

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1 browse

2 how to

3 suggest a proteome

4 proteome quality index

5 browse proteomes

6 view details

7 add data

8 dogma

9 bioinformatics

10 env microbiology

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Proteome Quality Index | pqi-list.org Reviews

https://pqi-list.org

Assess the quality of my proteome. Download a filtered list of proteomes. Upload a custom PQI Metric. Upload a custom Metric. PQI is measure of proteome quality available from a comprehensive database of downloadable proteomes. Completely sequenced genomes for which there is an available set of protein sequences (the proteome) are given a 5-star rating supported by 11 different metrics of quality. Take me to the Proteomes! Proteomes, each with quality determined by up to 11. Add your own data. Please cit...

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pqi-list.org

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Suggest a Proteome

http://www.pqi-list.org/suggest

Assess the quality of my proteome. Download a filtered list of proteomes. Upload a custom PQI Metric. Upload a custom Metric. We're always looking for new proteomes to improve PQI, if you know of one you think we should add, please tell us! A URL where this proteome can be downloaded. NCBI Taxonomy can be found here. Your email address will only be used to contact you regarding this proteome suggestion. PQI is a project of the Computational Genomics Group. At the University of Bristol.

2

Upload a custom metric

http://www.pqi-list.org/method/add

Assess the quality of my proteome. Download a filtered list of proteomes. Upload a custom PQI Metric. Upload a custom Metric. Add a custom PQI Metric. If you would like you can upload your own metric data for our set of proteomes. Custom proteomes can be toggled on or off on the results pages of PQI. Adding your metric to PQI requires that you upload your data as a tab separated file. You can read more about the file spec here. A short, single line description of your metric. Files should match the spec.

3

Proteome Quality Index

http://www.pqi-list.org/list

Assess the quality of my proteome. Download a filtered list of proteomes. Upload a custom PQI Metric. Upload a custom Metric. A comprehensive database of quality assessed proteomes, powered by the SUPERFAMILY Database. Wellcome Trust Sanger Institute. J Craig Venter Institute. Lactobacillus johnsonii small FI9785 /small. Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus johnsonii. Pseudomonas fluorescens small A506 /small. Anabaena sp. 90 small /small. Staphyl...

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bioinformatics.bris.ac.uk

Software - Computational Genomics Group

http://www.bioinformatics.bris.ac.uk/software.html

The Mogrify resource predicts how to trans-differentiation from any human cell type to any other human cell typeby perturbing the transcriptional network. Mogrify includes all cell types from the FANTOM5. Database contains assignments of protein domains of known structures to all completely sequenced genomes. The library of hidden Markov models and the software required to run the SUPERFAMILY assignment procedure is available from the downloads page. There is a very low traffic mailing list. A community ...

bioinformatics.bristol.ac.uk

Software - Computational Genomics Group

http://www.bioinformatics.bristol.ac.uk/software.html

The Mogrify resource predicts how to trans-differentiation from any human cell type to any other human cell typeby perturbing the transcriptional network. Mogrify includes all cell types from the FANTOM5. Database contains assignments of protein domains of known structures to all completely sequenced genomes. The library of hidden Markov models and the software required to run the SUPERFAMILY assignment procedure is available from the downloads page. There is a very low traffic mailing list. A community ...

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Proteome Quality Index

Assess the quality of my proteome. Download a filtered list of proteomes. Upload a custom PQI Metric. Upload a custom Metric. PQI is measure of proteome quality available from a comprehensive database of downloadable proteomes. Completely sequenced genomes for which there is an available set of protein sequences (the proteome) are given a 5-star rating supported by 11 different metrics of quality. Take me to the Proteomes! Proteomes, each with quality determined by up to 11. Add your own data. Please cit...

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