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Protein Interactions Calculator (PIC) is a server which recognizes various kinds of interactions;such as disulphide bonds, hydrophobic interactions, ionic interactions, hydrogen bonds, aromatic- aromatic interactions, aromatic-sulphur interactions and cation- pi interactions within a protein or between proteins in a complex. It also determines the accessible surface area as well as the distance of a residue from the surface of the protein. The input should be in the Protein data bank(.pdb) format. Interacti

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P I C | Webserver | pic.mbu.iisc.ernet.in Reviews

<META> DESCRIPTION

Protein Interactions Calculator (PIC) is a server which recognizes various kinds of interactions;such as disulphide bonds, hydrophobic interactions, ionic interactions, hydrogen bonds, aromatic- aromatic interactions, aromatic-sulphur interactions and cation- pi interactions within a protein or between proteins in a complex. It also determines the accessible surface area as well as the distance of a residue from the surface of the protein. The input should be in the Protein data bank(.pdb) format. Interacti

<META> KEYWORDS

1 protein interactions

2 protein protein interactions

3 hydrophobic interactions

4 disulphide bridges

5 hydrogen bonds

6 main chain main chain hydrogen bonds

7 main chain side chain hydrogen bonds

8 side chain side chain hydrogen bonds

9 aromatatic - aromatatic interactions

10 ionic interactions

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p i c,protein interactions calculator,skip menu,criteria,submit job,lab page,introduction,note,server developed by,webpage developed by,dinesh d c,maintained by,please cite,other resources,supfam,pali,prodoc,king,cascade psi blast,mulpssm,by mantis a

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P I C | Webserver | pic.mbu.iisc.ernet.in Reviews

https://pic.mbu.iisc.ernet.in

Protein Interactions Calculator (PIC) is a server which recognizes various kinds of interactions;such as disulphide bonds, hydrophobic interactions, ionic interactions, hydrogen bonds, aromatic- aromatic interactions, aromatic-sulphur interactions and cation- pi interactions within a protein or between proteins in a complex. It also determines the accessible surface area as well as the distance of a residue from the surface of the protein. The input should be in the Protein data bank(.pdb) format. Interacti

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pic.mbu.iisc.ernet.in

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P I C | Webserver | Job

http://pic.mbu.iisc.ernet.in/job.html

Molecular Biophysics Unit, Indian Institue of Science, Bangalore. Upload query structure in the three-dimensional coordinate set format of the protein data bank. The filename should be a four letter code with a .pdb or .ent or .atm or .txt extensions. e.g.,: 1EJG.pdb. This option can accept a monomeric or a multichain protein file. Upload a file in PDB format:. Hydrophobic Interactions Enter the interaction cut-off value. Main Chain-Main Chain Hydrogen Bonds. Main Chain-Side Chain Hydrogen Bonds. Solvent...

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P I C | Webserver

http://pic.mbu.iisc.ernet.in/index.html

Molecular Biophysics Unit, Indian Institue of Science, Bangalore. I Heteroatoms are not included for the analysis. Ii For NMR structure only the first model is considered. To submit a JOB click here. KGTINA in association with R.Bhadra and Prof. N. Srinivasan (ns@mbu.iisc.ernet.in). Naveen Kumar .N (nkumar@mbu.iisc.ernet.in). K G Tina, R. Bhadra and N. Srinivasan, PIC: Protein Interactions Calculator, Nucleic Acids Research, 2007, Vol. 35, Web Server issue W473 W476. Download PDF.

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pauling.mbu.iisc.ac.in

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http://pauling.mbu.iisc.ac.in/links.html

Proteins : Structure, Function and Evolutionary Group. NS LABPAGE SEARCH ENGINE. The universal protein resource. Consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated). Integrated Resources of Proteins Domains and Functional Sites. Database of protein families and domains. Structural and Functional Annotation of Protein Families. Protein families db (HMM derived) [Mirrors at JFRC (USA). CCBB (South Korea) Institute, UK. Protein Motif fingerprint db. Biomolecula...

nslab.mbu.iisc.ernet.in

N S Lab Useful links

http://nslab.mbu.iisc.ernet.in/links.html

Proteins : Structure, Function and Evolutionary Group. NS LABPAGE SEARCH ENGINE. The universal protein resource. Consists of UniProtKB/Swiss-Prot (high-level annotation) and UniProtKB/TrEMBL (computer-annotated). Integrated Resources of Proteins Domains and Functional Sites. Database of protein families and domains. Structural and Functional Annotation of Protein Families. Protein families db (HMM derived) [Mirrors at JFRC (USA). CCBB (South Korea) Institute, UK. Protein Motif fingerprint db. Biomolecula...

nslab.mbu.iisc.ernet.in

N S Lab Resources

http://nslab.mbu.iisc.ernet.in/resources.html

Proteins : Structure, Function and Evolutionary Group. The Databases and Servers developed in our lab:. A database of superfamily relationships between Pfam seqeunce families. Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Pandit SB, Bhadra R, Gowri VS, Balaji S, Anand B, O.Krishnadev, V. S. Gowri, C. Sairam Swamy, Vaishnavi R., R. Sowdhamini and N.Srinivasan. SUPFAM v2.1 Webstats. Krupa A, Abhinandan K R., Anamika Krishanpal, Juliette Martin, and N.Sri...This ...

pauling.mbu.iisc.ac.in

N S Lab Resources

http://pauling.mbu.iisc.ac.in/resources.html

Proteins : Structure, Function and Evolutionary Group. The Databases and Servers developed in our lab:. A database of superfamily relationships between Pfam seqeunce families. Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Pandit SB, Bhadra R, Gowri VS, Balaji S, Anand B, O.Krishnadev, V. S. Gowri, C. Sairam Swamy, Vaishnavi R., R. Sowdhamini and N.Srinivasan. SUPFAM v2.1 Webstats. Krupa A, Abhinandan K R., Anamika Krishanpal, Juliette Martin, and N.Sri...This ...

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pic.mbu.iisc.ernet.in

P I C | Webserver

Molecular Biophysics Unit, Indian Institue of Science, Bangalore. I Heteroatoms are not included for the analysis. Ii For NMR structure only the first model is considered. To submit a JOB click here. KGTINA in association with R.Bhadra and Prof. N. Srinivasan (ns@mbu.iisc.ernet.in). Naveen Kumar .N (nkumar@mbu.iisc.ernet.in). K G Tina, R. Bhadra and N. Srinivasan, PIC: Protein Interactions Calculator, Nucleic Acids Research, 2007, Vol. 35, Web Server issue W473 W476. Download PDF.

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