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Welcome to the MRtrix user documentation! — MRtrix 3.0 documentation

Images and other data. Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Multi-tissue constrained spherical deconvolution. Orthonormal Spherical Harmonic basis. List of MRtrix3 commands. Tournier et al. 2007.

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Images and other data. Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Multi-tissue constrained spherical deconvolution. Orthonormal Spherical Harmonic basis. List of MRtrix3 commands. Tournier et al. 2007.

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4 before you install

5 linux installation

6 macos x installation

7 windows installation

8 hpc clusters installation

9 getting started

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Welcome to the MRtrix user documentation! — MRtrix 3.0 documentation | mrtrix.readthedocs.io Reviews

https://mrtrix.readthedocs.io

Images and other data. Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Multi-tissue constrained spherical deconvolution. Orthonormal Spherical Harmonic basis. List of MRtrix3 commands. Tournier et al. 2007.

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mrtrix.readthedocs.io

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Windows installation — MRtrix 3.0 documentation

http://mrtrix.readthedocs.io/en/latest/installation/windows_install.html

Install and update MSYS2. Set up git and download. Compiling external projects with. Images and other data. Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Multi-tissue constrained spherical deconvolution. 33 co...

2

Advanced debugging — MRtrix 3.0 documentation

http://mrtrix.readthedocs.io/en/latest/tutorials/advanced_debugging.html

Images and other data. Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Multi-tissue constrained spherical deconvolution. Diffusion gradient scheme handling. Orthonormal Spherical Harmonic basis. Installation, bu...

3

Command-line usage — MRtrix 3.0 documentation

http://mrtrix.readthedocs.io/en/latest/getting_started/command_line.html

Images and other data. Using short option names. Ordering of options on the command-line. Number sequences and floating-point lists. How is it implemented? Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Options...

4

Before you install — MRtrix 3.0 documentation

http://mrtrix.readthedocs.io/en/latest/installation/before_install.html

Images and other data. Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Multi-tissue constrained spherical deconvolution. Diffusion gradient scheme handling. Orthonormal Spherical Harmonic basis. As published by ...

5

HPC clusters installation — MRtrix 3.0 documentation

http://mrtrix.readthedocs.io/en/latest/installation/hpc_clusters_install.html

And dependencies from source. Images and other data. Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Multi-tissue constrained spherical deconvolution. Diffusion gradient scheme handling. List of MRtrix3 commands.

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Welcome to the MRtrix user documentation! — MRtrix 3.0 documentation

Images and other data. Structural connectome for Human Connectome Project (HCP). Using the connectome visualisation tool. Structural connectome construction: Using. Warping images using warps generated from other packages. Frequently Asked Questions (FAQ). DWI Pre-processing for Quantitative Analysis. Spherical-deconvolution Informed Filtering of Tractograms (SIFT). Multi-tissue constrained spherical deconvolution. Orthonormal Spherical Harmonic basis. List of MRtrix3 commands. Tournier et al. 2007.

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