This is a site for various projects in evolutionary biology, molecular evolution and phylogenetic epidemiology being carried out by members of the research group of Andrew Rambaut at the Institute of Evolutionary Biology, University of Edinburgh.
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Molecular Evolution, Phylogenetics and Epidemiology | influenza.bio.ed.ac.uk Reviews
https://influenza.bio.ed.ac.uk
This is a site for various projects in evolutionary biology, molecular evolution and phylogenetic epidemiology being carried out by members of the research group of Andrew Rambaut at the Institute of Evolutionary Biology, University of Edinburgh.
influenza.bio.ed.ac.uk
Molecular Evolution, Phylogenetics and Epidemiology
http://influenza.bio.ed.ac.uk/map.html
Molecular evolution, phylogenetics and epidemiology. Molecular Evolution, Phylogenetics and Epidemiology. Research themes and grants. Evolution and phylogenetics Software. Publications from the group. Back to the front page. Institute of Evolutionary Biology. Treebio.ed.ac.uk. Andrew Rambaut, 2007.
Software
http://influenza.bio.ed.ac.uk/software
Molecular evolution, phylogenetics and epidemiology. Explore temporal signal and clocklikeness in trees (formerly Path-O-Gen). Latest version: v1.5. Produce high-quality figures of phylogenetic trees. Latest version: v1.4.2. A program that calculates summary statistics of a set of trees. Latest version: v1.2. BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences. Latest version: v1.8.4. A program for analysing results from Bayesian MCMC programs such as BEAST and MrBayes.
Publications
http://influenza.bio.ed.ac.uk/publications
Molecular evolution, phylogenetics and epidemiology. Virus and Pathogen Evolution. Molecular Evolution and Phylogenetic Analyses. Evolutionary Inference, Phylogenetic Methods, Population Genetic Models. The Comparative Method and Macro-Evolutionary Models. General Evolutionary Biology and Ecology. Luiz Fagundes de Carvalho. Virus and Pathogen Evolution. Exploring the temporal structure of heterochronous sequences using TempEst. Lam TT, de Carvalho LM and Pybus OG (2016) Virus Evolution. Catherine Hogan, ...
People
http://influenza.bio.ed.ac.uk/people
Molecular evolution, phylogenetics and epidemiology. Luiz Fagundes de Carvalho. The group at work. PhD student working on the evolutionary dynamics of RNA viruses. Luiz Fagundes de Carvalho. PhD Student working on livestock infectious disease epidemiology jointly supervised by Mark Woolhouse, Andrew Rambaut and Ruth Zadoks. The evolution of emerging human viral pathogens, in particular, fast evolving RNA viruses that have been sampled through time. Inferring evolutionary and population dynamic proces...
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IV Sequence Distribution Tool. IV Sequence Quality Filter System. IV Protein Structure View. The current version of IVDB data was updated on 2007-01-25. IVDB contains 43,874 influenza virus nucleotide sequences, 53,983 CDS sequences and 53,983 protein sequences. IVDB newly developed the IV Sequence Distribution Tool. Which facilitates IV global transmission and evolution analysis. Other Databases in BGI. A knowledgebase for silkworm biology and genomics. A knowledgebase for silkworm biology and genomics.
Molecular Evolution, Phylogenetics and Epidemiology
Molecular evolution, phylogenetics and epidemiology. Molecular Evolution, Phylogenetics and Epidemiology. Research themes and grants. Evolution and phylogenetics Software. Publications from the group. How to find us. This site is for the research, software and publications of Andrew Rambaut and members of his research group. The BEAST software package has its own website: http:/ beast.bio.ed.ac.uk. This includes a new section on the novel human 2c genotype coronavirus. Diehl WE, Lin AE, Grubaugh ND, et al.
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