gyra.ualg.pt

Welcome to the CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt — GYRA homepage v<release>

Gyra - gyra.ualg.pt. Welcome to the CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt. Deleting jobs from the queue. Motif and pattern searching. Multiple and pair-wise sequence alignment. Population genetics / coalescent. Roche 454 (FLX Titanium). Illumina (HiSeq 2000, GAIIx, GAIIe). Hybrid 454 and Illumina. Sequence read manipulation / cleaning / error corrections (kmer analysis). Alignment, mapping, and scaffolding. Bioinformatics suites and libraries. Welcome to the CCMAR. All jobs submitted ...

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Welcome to the CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt — GYRA homepage v<release> | gyra.ualg.pt Reviews

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Gyra - gyra.ualg.pt. Welcome to the CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt. Deleting jobs from the queue. Motif and pattern searching. Multiple and pair-wise sequence alignment. Population genetics / coalescent. Roche 454 (FLX Titanium). Illumina (HiSeq 2000, GAIIx, GAIIe). Hybrid 454 and Illumina. Sequence read manipulation / cleaning / error corrections (kmer analysis). Alignment, mapping, and scaffolding. Bioinformatics suites and libraries. Welcome to the CCMAR. All jobs submitted ...

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1 navigation

2 table of contents

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4 access/support

5 specifying memory requirements

6 interactive job submission

7 batch submission

8 submitting parallel jobs

9 monitoring the queue

10 next generation sequence assembly

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Welcome to the CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt — GYRA homepage v<release> | gyra.ualg.pt Reviews

https://gyra.ualg.pt

Gyra - gyra.ualg.pt. Welcome to the CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt. Deleting jobs from the queue. Motif and pattern searching. Multiple and pair-wise sequence alignment. Population genetics / coalescent. Roche 454 (FLX Titanium). Illumina (HiSeq 2000, GAIIx, GAIIe). Hybrid 454 and Illumina. Sequence read manipulation / cleaning / error corrections (kmer analysis). Alignment, mapping, and scaffolding. Bioinformatics suites and libraries. Welcome to the CCMAR. All jobs submitted ...

INTERNAL PAGES

gyra.ualg.pt

1

A Brief Introduction to UNIX — unix-course v1 documentation

http://gyra.ualg.pt/unix-course/unix-course.html

A Brief Introduction to UNIX. Profile, environment variables, and $PATH. Where am I and where do I want to be. Copying files to an from a UNIX machine. Copy to using scp (secure copy). Copy from using scp. Enter search terms or a module, class or function name. A Brief Introduction to UNIX. Words in UNIX are case sensitive - foo, Foo, and FOO are 3 different words (this used not to be the case on OSX - still? Root is a special user, the superuser who has administrative powers. For help on commands try.

2

LAMARC Documentation

http://gyra.ualg.pt/lamarc/index.html

LAMARC - Likelihood Analysis with Metropolis Algorithm using Random Coalescence. This documentation covers use of the program LAMARC, which can estimate population sizes, migration rates, growth rates, and recombination rate using a Metropolis-Hastings Monte Carlo Markov Chain algorithm. LAMARC's 'sister program' is MIGRATE. With which it shares history, algorithms, and some code base, but which is now being maintained exclusively by Peter Beerli at Florida State University. Plans for the Future. Mary Ku...

3

R: Package Index

http://gyra.ualg.pt/misc/R-packages.html

Packages in the standard library. Analysis of Ecological Data : Exploratory and Euclidean methods in Environmental sciences. Methods for Affymetrix Oligonucleotide Arrays. Affymetrix Data for Demonstration Purpose. Tools for parsing Affymetrix data files. Methods for fitting probe-level models. QC Report Generation for affyBatch objects. Interpolation of irregularly spaced data. A gallery of animations in statistics and utilities to create animations. Annotation tools for Affymetrix biological metadata.

4

Ganglia Cluster Toolkit:: PSB CCMAR Rocks-Cluster Cluster Report

http://gyra.ualg.pt/ganglia

PSB CCMAR Rocks-Cluster Cluster Report for Fri, 26 Aug 2016 11:52:59 0200. Overview of PSB CCMAR Rocks-Cluster. Avg Load (15, 5, 1m):. 58%, 60%, 63%. PSB CCMAR Rocks-Cluster load one. Nodes colored by 1-minute load) Legend. Ganglia Web Frontend version 3.1.2 Check for Updates. Ganglia Web Backend (gmetad). Version 3.1.2 Check for Updates. Downloading and parsing ganglia's XML tree took 0.1621s. Images created with RRDTool. Version 1.3.8. Pages generated using TemplatePower. Version 3.0.1.

5

Note on running NHPhylobayes — GYRA homepage v<release>

http://gyra.ualg.pt/nhPhylobayes_notes.html

Gyra - gyra.ualg.pt. Note on running NHPhylobayes. Enter search terms or a module, class or function name. Note on running NHPhylobayes. Current version is 0.2.3. Paul Lewis has a nice description of how to run nhPhylobayes here. NhPhylobayes is very picky about the Nexus file format:. Must have “Begin data;” “Matrix” “End” and bases must be capitals. No “X”s for ambiguous amino-acids change to “-“. Current working dir is /home/cymon/nhpb. Data file is named ‘mydata.nex’. Run number is 1.

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gyra.ualg.pt

Welcome to the CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt — GYRA homepage v<release>

Gyra - gyra.ualg.pt. Welcome to the CCMAR Computational Cluster Facility: GYRA - gyra.ualg.pt. Deleting jobs from the queue. Motif and pattern searching. Multiple and pair-wise sequence alignment. Population genetics / coalescent. Roche 454 (FLX Titanium). Illumina (HiSeq 2000, GAIIx, GAIIe). Hybrid 454 and Illumina. Sequence read manipulation / cleaning / error corrections (kmer analysis). Alignment, mapping, and scaffolding. Bioinformatics suites and libraries. Welcome to the CCMAR. All jobs submitted ...

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It all about handmade. Saturday, November 30, 2013. Hello Kitty In The House. Assalamualaikum. Dah lama xupdate blog craft ni. Jahit je tapi xsempat nk upload gambar kt blog. Ms Gyra dapat oder carry bag lagi kali ni. Budak office pulak yg bekenan dengan hasil craft Ms Gyra kali ni. Dah cukup ok la tu kalau ade orang yg masih minat craft me. Hehe. Hello Kitty in the house again! Since buat carry bag kat Amie aritu ramai pulak yg suke Hello Kitty ni. Kat tepi me just buat love sahaja. Price : RM50.00.