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Email Center

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In order to send us an Email please fill the following form. About this web server.

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ExpaRNA - Exact Matching

http://rna.informatik.uni-freiburg.de/ExpaRNA

ExpaRNA - Exact Matching. ExpaRNA - Exact Matching. For articles describing the tool refer to the reference section below. Please cite us. When using our tools. For more information check the help page. Try ExpaRNA with these examples. Sequence Input in FASTA Format:. Minimal size of included substructures:. Maximal number of used substructures:. Just EPM size (default). EPM 2 = prefer larger patterns. Write ExpaRNA result as input for LocARNA with anchor constraints:. Write all EPMs into file:.

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CopraRNA - sRNA Targeting

http://rna.informatik.uni-freiburg.de/CopraRNA

CopraRNA - sRNA Targeting. CopraRNA - sRNA Targeting. For articles describing the tool refer to the reference section below. Please cite us. When using our tools. For more information check the help page. Try CopraRNA with this example. 5 ChiX sequences ( 2h) ( input. Minimal rel. cluster size:. Uploading sequences - please wait. When using CopraRNA please cite :. CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains. Nucleic Acids Research, 2014, 42 (W1), W119-W123.

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CRISPRmap - CRISPR Conservation

http://rna.informatik.uni-freiburg.de/CRISPRmap

CRISPRmap - CRISPR Conservation. CRISPRmap - CRISPR Conservation. CRISPRmap provides a quick and detailed insight into repeat conservation and diversity of both bacterial and archaeal systems. It comprises the largest dataset of CRISPRs to date and enables comprehensive independent clustering analyses to determine conserved sequence families, potential structure motifs for endoribonucleases, and evolutionary relationships. When using our tools. For more information check the help page. Nucleic Acids Rese...

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Contact and Information

http://rna.informatik.uni-freiburg.de/About.jsp

Department of Computer Science. Contact and bug report: please use our Email Center. Technical details for server version 4.2.3. The following software was used for developing this web server. Package links and non-commercial use licences last validated 27/02/2012. About this web server.

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Publications

http://rna.informatik.uni-freiburg.de/Publications.jsp

When using the Freiburg RNA Tools please. Cite the according publications. From the lists provided for each individual tool. Provide the following web URL. Http:/ rna.informatik.uni-freiburg.de. With version (4.2.3) along with your citation, to enable an easy access of the Freiburg RNA Tools. A general list of publications. By the Freiburg Bioinformatics Group is available here. If you have questions concerning publications or citation, please contact us. Tool specific lists of publications. IntaRNA: eff...

rna.informatik.uni-freiburg.de

MARNA - Structure Alignment

http://rna.informatik.uni-freiburg.de/MARNA

For each sequence only." /. MARNA - Structure Alignment. MARNA - Structure Alignment. MARNA is not maintained anymore since 2005. For the task of multiple sequence-structure RNA alignment the more advanced tool LocARNA. Is superseding MARNA (check fixed structure input in LocARNA help page). For articles describing the tool refer to the reference section below. Please cite us. When using our tools. For more information check the help page. Try MARNA with this example. TRNA alignment ( input. Cameron Smit...

rna.informatik.uni-freiburg.de

Frequently Asked Questions

http://rna.informatik.uni-freiburg.de/Faq.jsp

How long are computed results available and stored? What publications to cite when using the server? Why do I get a warning saying that my browser has incompatibility issues with the web server? Who to contact if I have further trouble or encounter problems not listed here? I have created a cool new RNA Bioinformatics tool, is it possible to integrate it into the web server? How are RNA structures modelled? Why are mRNAs assumed to fold locally and not globally? When are sRNAs homologous? How does the mR...

rna.informatik.uni-freiburg.de

Help

http://rna.informatik.uni-freiburg.de/Help.jsp

For help with a particular tool, please select a link below. For general information and answers to frequently asked questions, please go to the FAQ. If you want to contact us please visit the email. Help for individual tools. Please select one of the following links to get tool-specific help information:. About this web server.

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PDZPepInt - PDZ Interactions

http://modpepint.informatik.uni-freiburg.de/PDZPepInt

PDZPepInt - PDZ Interactions. PDZPepInt - PDZ Interactions. For articles describing the tool refer to the reference section below. Please cite us. When using our tools. For more information check the help page. Try PDZPepInt with this example. PDZ interactions ( input. Some filters require UniProt IDs. Along with all targeted protein sequences in the FASTA input. PDZ Domains: select [all]. Some filters require UniProt IDs. Along with all targeted protein sequences in the FASTA input. About this web server.