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Global Change Conservation

The Global Change Conservation Lab at the Missouri Botanical Garden. BayesLopod: Species distribution modeling with “messy” data. March 1st, 2018. Species’ environmental tolerances. The bayesLopod model juxtaposes records of a species (top left) with sampling intensity (bottom left) to estimate the range (main panel). The model can utilize badly georeferenced specimens (this species has only 90 accurately-referenced records but the model uses 5300 records). January 23rd, 2018. Up-scaling biodiversity: Es...

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Global Change Conservation | earthskysea.org Reviews

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The Global Change Conservation Lab at the Missouri Botanical Garden. BayesLopod: Species distribution modeling with “messy” data. March 1st, 2018. Species’ environmental tolerances. The bayesLopod model juxtaposes records of a species (top left) with sampling intensity (bottom left) to estimate the range (main panel). The model can utilize badly georeferenced specimens (this species has only 90 accurately-referenced records but the model uses 5300 records). January 23rd, 2018. Up-scaling biodiversity: Es...

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1 global change conservation

2 available on cran

3 and github

4 posted in nichey

5 no comments

6 upscaling biodiversity

7 accepted

8 ecological monographs

9 phenotypic distribution modeling

10 global change biology

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Global Change Conservation | earthskysea.org Reviews

https://earthskysea.org

The Global Change Conservation Lab at the Missouri Botanical Garden. BayesLopod: Species distribution modeling with “messy” data. March 1st, 2018. Species’ environmental tolerances. The bayesLopod model juxtaposes records of a species (top left) with sampling intensity (bottom left) to estimate the range (main panel). The model can utilize badly georeferenced specimens (this species has only 90 accurately-referenced records but the model uses 5300 records). January 23rd, 2018. Up-scaling biodiversity: Es...

INTERNAL PAGES

earthskysea.org

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Regionalizations « Adam B. Smith

http://www.earthskysea.org/regionalizations

Adam B. Smith. Regionalizations are just that–schemes for dividing the Earth into regions. Regions can be entirely anthropogenic (e.g., political boundaries) or based on dominant plant life form (ecoregions/biomes), physiography, and/or climate. Here I have collected a non-exhaustive series of regionalizations I’ve found useful in my work. Freshwater Ecoregions of the World (FEOW). Based on: Biogeography of freshwater vertebrates and drainage basins. Global Environmental Stratification (GEnS). Adam B&#46...

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Data Portals « Adam B. Smith

http://www.earthskysea.org/data-portals

Adam B. Smith. I rely heavily on online data portals for climate. Land cover and political units, soils and geology, biodiversity (vertebrates, invertebrates, and plants), taxonomic name resolution. Phylogenetic and taxonomic relationships, and other geographical and non-geographical data and tools. So for my convenience and that of others, I have collated many of those I find most useful. Workshops & Classes. Publications & CV. Climate & Weather. Adam B. Smith is proudly powered by WordPress.

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Biodiversity « Adam B. Smith

http://www.earthskysea.org/biodiversity

Adam B. Smith. R Tools for Biodiversity Vertebrates Invertebrates Plants Diseases and Pathogens Any Taxon Other. R Tools for Biodiversity. For downloading data from GBIF, BISON, AntWeb, and others. Light cleaning and visualization of biodiversity data. What: Specimen records of fish. Notes: Also see VertNet. Life History Data of Lizards of the World. What: Life history data. Citation: Mesquita et al. 2015. Life history data of lizards of the world. What: Citizen science observations of birds. Where: Worl...

4

R Code « Adam B. Smith

http://www.earthskysea.org/r-code

Adam B. Smith. Below are some useful R. Scripts I’ve written for handling biodiversity data and species distribution modeling. If you use any of them, all I ask is you please let me know. Aligned rank transformation for non-parametric ANOVA. By Jacob Wobbrock et al. See their short article. For a succinct explanation. Note: By default the script uses the mean as a measure of centrality, but other metrics can be used, though the mean is likely the best ( Peterson 2002. Calculate the Continuous Boyce Index.

5

Climate & Weather « Adam B. Smith

http://www.earthskysea.org/climate-weather

Adam B. Smith. Climate & Weather. Climate and Weather Other Useful Climatology Stuff. With normals (30-yr averages) for current and future projections from 8 GCMs and their ensemble for CMIP5 (IPCC 5th Assessment Report) at 1-km resolution. Includes many biologically-relevant variables. For climate data relevant to freshwater environments. Publication: Domish et al. 2015 (Near-global freshwater-specific environmental variables for biodiversity analyses in 1 km resolution. What: Future climate rasters.

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Collaborators - Loretta Johnson Lab

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Nora M. Bello. Department of Plant Pathology. Biological and Agricultural Engineering. Fort Hays State University. Biological and Agricultural Engineering. North Carolina State University. Raleigh, North Carolina. Paul St. Amand. USDA Plant Genotyping Facility. Department of Plant Pathology. Department of Plant Pathology. Wheat Genetics Resource Center. USDA Plant Materials Center. Western Kansas Agricultural Research Centers. Create a free website.

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Global Change Conservation

The Global Change Conservation Lab at the Missouri Botanical Garden. BayesLopod: Species distribution modeling with “messy” data. March 1st, 2018. Species’ environmental tolerances. The bayesLopod model juxtaposes records of a species (top left) with sampling intensity (bottom left) to estimate the range (main panel). The model can utilize badly georeferenced specimens (this species has only 90 accurately-referenced records but the model uses 5300 records). January 23rd, 2018. Up-scaling biodiversity: Es...

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