genometech.gersteinlab.org
Genome Technology group @ Gerstein lab
http://genometech.gersteinlab.org/home/index.html
Genome Technology @ Gerstein lab. Affiliated at Yale University. We are working on the design and analysis of large scale tiling arrays and next generation sequencing data. Our theoretical and computational work is complemented by the collaboration with experimentalists and development of new software tools. For the latest updates of our research, please visit our wiki page.
webserver.rc.yale.edu
Table of Contents for Model Analysis Applications
http://webserver.rc.yale.edu/model_anal.html
Table of Contents for Model Analysis Applications. Special Category: Volume and Packing Calculations. Special Category: Questions and Methods for Every New Structure. Nucleic acid structure analysis and visualization. Calculate pockets on the surface of a molecule. Program for the Automated Docking of Flexible Ligands to Macromolecules. Check Geometry in NMR Protein Structures. Computational searching of protein helix interactions. Crystallography and NMR System (Local Only). Compare Side Chain Movements.
molekulamodellezes.lap.hu
Molekulamodellezés - Külföldi kutatóhelyek, egyetemek. A legjobb válaszok profiktól.
http://molekulamodellezes.lap.hu/kulfoldi_kutatohelyek_egyetemek/25596769
Legyen a Startlap a kezdőlapom. Külföldi Kutatóhelyek, Egyetemek. Http:/ molekulamodellezes.lap.hu/. Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Cambridge University modellező csoport. Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! Ezt a linket add a Startlaphoz! National Geographic Channel Magyarország. Molekulamodellező kurzus anyaga - Hetényi Csaba. Molekulák megjelenítése - PyMol.
genometech.gersteinlab.org
Genome Technology group @ Gerstein lab
http://genometech.gersteinlab.org/home/analyses.html
Genome Technology @ Gerstein lab. Affiliated at Yale University. E develop in silico ChIP-seq, a computational method to simulate the experimental outcome by placing tags onto the genome according to particular assumed distributions for the actual binding sites and for the background genomic sequence. Click here for a list of related publications. Modeling ChIP sequencing in silico with applications. ZD Zhang, J Rozowsky, M Snyder, J Chang, M Gerstein (2008) PLoS Comput Biol. 4: e1000158. [link]. JS Rozo...
rc.yale.edu
Table of Contents for Model Analysis Applications
http://www.rc.yale.edu/model_anal.html
Table of Contents for Model Analysis Applications. Special Category: Volume and Packing Calculations. Special Category: Questions and Methods for Every New Structure. Nucleic acid structure analysis and visualization. Calculate pockets on the surface of a molecule. Program for the Automated Docking of Flexible Ligands to Macromolecules. Check Geometry in NMR Protein Structures. Computational searching of protein helix interactions. Crystallography and NMR System (Local Only). Compare Side Chain Movements.
rc.yale.edu
Table of Contents for Molecular Modeling and SimulationApplications
http://www.rc.yale.edu/model_toc.html
Table of Contents for Molecular Modeling and Simulation Applications. Dynamics Simulation (Local Only). Model Building, Completion, and Validation. Most Favorable Ligand/Receptor Binding. Dynamics for Molecular Modeling. Chemical Structure Drawing package. Model Building and Refinement. Protein Homology and Comparative Modeling. Interactive manipulation in three diensional space. Dynamics for Molecular Modeling. Nucleic Acid Modeling Tool. Model Building and Refinement. Build Hydrogens on your Model.
webserver.rc.yale.edu
Table of Contents for Molecular Modeling and SimulationApplications
http://webserver.rc.yale.edu/model_toc.html
Table of Contents for Molecular Modeling and Simulation Applications. Dynamics Simulation (Local Only). Model Building, Completion, and Validation. Most Favorable Ligand/Receptor Binding. Dynamics for Molecular Modeling. Chemical Structure Drawing package. Model Building and Refinement. Protein Homology and Comparative Modeling. Interactive manipulation in three diensional space. Dynamics for Molecular Modeling. Nucleic Acid Modeling Tool. Model Building and Refinement. Build Hydrogens on your Model.
genometech.gersteinlab.org
Genome Technology group @ Gerstein lab
http://genometech.gersteinlab.org/home/projects.html
Genome Technology @ Gerstein lab. Affiliated at Yale University. Ilescope is a fully integrated data processing pipeline for analyzing tiling array data. In a completely automated fashion, it will normalize signals between channels and across arrays, combine replicate experiments, score each array element, and identify genomic features. Click here for a list of related publications. BoCaTFBS: a Boosted-cascade Learner to Refine the Binding Sites Suggested by ChIP-chip experiments. 16: 271-81. [link].
genometech.gersteinlab.org
Genome Technology group @ Gerstein lab
http://genometech.gersteinlab.org/home/publications.html
Genome Technology @ Gerstein lab. Affiliated at Yale University. For a complete list of papers published in our group. Individual references to some of these have also been provided under the relevant software or database.
genometech.gersteinlab.org
Genome Technology group @ Gerstein lab
http://genometech.gersteinlab.org/home/datasets.html
Genome Technology @ Gerstein lab. Affiliated at Yale University. Stat1 - Chromosome-wide Maps of STAT1/2 DNA Binding and IFN-regulated Gene Expression. Sing chromatin immunoprecipitation and DNA microarray analysis (ChIP-chip), we have identified the regions of human chromosome 22 bound by STAT1 and STAT2 in interferon-treated cells. Click here for a list of related publications. Global changes in STAT target selection and transcription regulation upon interferon treatments. 19: 2953-68. [link].
