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The Center for Microbial Ecology

The organization, research and educational activities, and personnel of the MSU Center for Microbial Ecology, an National Science Foundation science and technolology center.

http://cme.msu.edu/

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The Center for Microbial Ecology | cme.msu.edu Reviews
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The organization, research and educational activities, and personnel of the MSU Center for Microbial Ecology, an National Science Foundation science and technolology center.
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The Center for Microbial Ecology | cme.msu.edu Reviews

https://cme.msu.edu

The organization, research and educational activities, and personnel of the MSU Center for Microbial Ecology, an National Science Foundation science and technolology center.

SUBDOMAINS

nightingale.cme.msu.edu nightingale.cme.msu.edu

RDP Release 11 -- Sequence Analysis Tools

RDP web tool problems fixed! RDP web tool problems. We apologize for ongoing problems with several RDP web tools. Our team is now working hard to get them fixed! MyRDP login problem fixed! Apologize for the problem with myRDP login. Our team is working to fix it as soon as possible. Apology for slow/NO connection to RDP tools today. Thanks to Alex/Brian, etc. for working things out in the server room. RDP Director at GSC 19, May 14-17. Genomic Standards Consortium Meeting, Brisbane, Queensland, Australia.

fungene.cme.msu.edu fungene.cme.msu.edu

Functional Gene Pipeline / Repository

If you use RDP's FunGene,. Please cite our most recent article. Begin with these gene links:. Version 9.5 - GenBank 223 (as of 2/16/2018). Process your own Functional Gene data using our new. 8212; Syed Hashsham. 8212; Syed Hashsham. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Syed Hashsham. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Syed Hashsham. 8212; Tamara Tsoi Cole. 8212; Tamara Tsoi Cole. 8212; Xun Qian.

pyro.cme.msu.edu pyro.cme.msu.edu

RDP Rel. 11 Pipeline Tools

Over menu item for popup description;. On the menu item to begin work. Rarr; Pipeline Initial Process. Use the pipeline to process sequence libraries or assemble paired-end reads. CLASSIFIER → RDP Classifier. Assign bacterial/archaeal 16S or fungal 28S rRNA sequences to our taxonomical hierarchy. ALIGNER → Aligner. Align sequences using the fast, secondary-structure aware Infernal aligner. COMPLETE LINKAGE CLUSTERING → Complete Linkage Clustering. Formats for Common Programs:. SHANNON and CHAO1 INDEX.

rdp.cme.msu.edu rdp.cme.msu.edu

RDP Release 11 -- Sequence Analysis Tools

Pyro Job Submission up * *. Hardware Issues causing pyro issues now fixed. RDP Staff attending ASM Meeting in New Orleans. RDP staff will be attending the ASM General Meeting in New Orleans in the coming week. Two RDP posters will be presented: first on Tuesday morning:. RDP Release 11.4 available. Updated 16S rRNA hierarchy model to training set No. 14. FrameBot new option Add de novo to references available. WARNING - RDP unavailable Sat., March 7th. Classifier provides gene copy number adjustment.

INTERNAL PAGES

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1

CME Knowledge Transfer (Industrial Outreach)

http://www.cme.msu.edu/IND_OUT/ind.out.html

Outreach and Knowledge Transfer (Industrial Outreach Program). The Bachman Road site. We have been informed of acceptance of our proposal for a project involving an industrial brine pond. Additional activities in the bioremediation portion of the knowledge transfer program of the center include regular consultation with representatives of all the major economic and political sectors. An Industrial Advisory Panel. The US. Environmental Protection Agency. The Michigan Department of Environmental Quality.

2

CME Research Program

http://www.cme.msu.edu/RES_PROG/res.prog.html

Fundamental research done by Center investigators is focused on answering the following questions: (1) What genotypic and phenotypic characteristics influence competitive success in microbial populations and communities? 2) How is genetic diversity generated and maintained within microbial populations? 3) How do microorganisms adapt to adverse environmental conditions? 4) What is the extent of microbial diversity? This research is organized into the following five Thrust Groups:. Addresses the national n...

3

CME Educational Outreach

http://www.cme.msu.edu/ED_OUT/ed.out.html

Take a trip to The Microbe Zoo. 1 Detroit Public Schools. March 1 - March 30: Internship Information Distribution and Application/Resume Period. Week of April 5 - 10: Student-to-Student Internship Interviews. April 20, 1999, Hyatt Regency Hotel, Dearborn, MI: Detroit Spartans' Formal Launching. April 1 - May 30: Internship Training Workshop Planning. May 10 - August 10: Tier I Ten Week Community Service Internships. Teacher Coordinators Future Internship Sites Survey: Summer 1999. What is the CME?

4

CME International Activities

http://www.cme.msu.edu/INTERNATIONAL/int.prog.html

One major advantage of NSF Centers is to provide a focal point and means to foster high quality international collaborations. In latter years of the Center, we have recognized that this position is of unique value to the US and our students. Hence we have placed more emphasis on this objective. C so that they are not damaged by life at temperatures slightly above 0. In October, 1998, and a paper describing this new genus has been accepted by the Int'l. J. Syst. Bact. 3 Other country programs of note.

5

What is the Center for Microbial Ecology?

http://www.cme.msu.edu/CME_DESCRIPTION/CME.description.html

What is the CME? Dr James M. Tiedje, Director. The Center for Microbial Ecology. 540 Plant and Soil Sciences Building. East Lansing, Michigan 48824-1325. Phone 517-353-9021 / Fax 517-353-2917. The Center for Microbial Ecology was founded in 1989 by the National Science Foundation (NSF). As one of the first eleven Science and Technology Centers. The Center has major programs in Research. Population Dynamics and Evolution. The thrust groups are comprised of interdisciplinary teams drawn from 40 faculty wit...

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pyro.cme.msu.edu pyro.cme.msu.edu

myRDP Login

https://pyro.cme.msu.edu/merger/form.spr;jsessionid=C8070A89438BEB3C085D1F075AB7C955.perry

Your personalized work space. Note about Privacy and Data:. We intend to keep your data private, but your data may be subject to public disclosure due to security issues, programming error, human error, or other reasons. Please keep an up-to-date offline backup of your data at all times. To browse the pipeline tools as a guest please enter the username rdpdemo@demo.edu and password demo. Id (email, lowercase). But data will be erased regularly. 1992-2013 Michigan State University.

pyro.cme.msu.edu pyro.cme.msu.edu

myRDP Login

https://pyro.cme.msu.edu/classifier/form.spr;jsessionid=C8070A89438BEB3C085D1F075AB7C955.perry

Your personalized work space. Note about Privacy and Data:. We intend to keep your data private, but your data may be subject to public disclosure due to security issues, programming error, human error, or other reasons. Please keep an up-to-date offline backup of your data at all times. To browse the pipeline tools as a guest please enter the username rdpdemo@demo.edu and password demo. Id (email, lowercase). But data will be erased regularly. 1992-2013 Michigan State University.

fungene.cme.msu.edu fungene.cme.msu.edu

Functional Gene Pipeline / Repository

http://fungene.cme.msu.edu/tutorial/tutorials.jsp

Button to return to FGPR Home. Functional Gene Pipeline / Repository Tutorials. Short video tutorials demonstrate some of the basic features of the Functional Gene Pipeline. These tutorials average three minutes in length. They capture the screen as the tasks are performed while the narrator explains the tasks and the choices available to the user. (Video portion shows the original tan/green version of our headers; however, tool content and procedures are still accurate.). In the lower right side.

fungene.cme.msu.edu fungene.cme.msu.edu

Functional Gene Pipeline / Repository

http://fungene.cme.msu.edu/index.spr;jsessionid=3A72F1229C03946466961A26374EEB08.neptune

If you use RDP's FunGene,. Please cite our most recent article. Begin with these gene links:. Version 8.6 - GenBank 214 (as of 6/22/2016). Process your own Functional Gene data using our new. 8212; Syed Hashsham. 8212; Syed Hashsham. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Syed Hashsham. 8212; Robert Stedtfeld. 8212; Robert Stedtfeld. 8212; Syed Hashsham. 8212; Tamara Tsoi Cole. 8212; Tamara Tsoi Cole. 8212; Tim Johnson.

nightingale.cme.msu.edu nightingale.cme.msu.edu

About the RDP

http://nightingale.cme.msu.edu/misc/about.jsp

About the RDP Releases. The Ribosomal Database Project (RDP) provides ribosome related data services to the scientific community, including online data analysis, rRNA derived phylogenetic trees, and aligned and annotated rRNA sequences. Contributors to the RDP. RDP History and Previous Release Info. 1992-2014 Michigan State University Board of Trustees, East Lansing MI 48824. MSU is an affirmative-action, equal-opportunity employer.

microbialplanet.weebly.com microbialplanet.weebly.com

Links - Microbial Planet

http://microbialplanet.weebly.com/links.html

For more information about metagenomic projects:. NIH Human Microbiome Project. European Commission MetaHit Project. The US Department of Energy Joint Genome Institute (JGI). Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis (CAMERA). The Genome Institute at Washington University. Center for Microbial Ecology at Michigan State University. Create a free website.

rdp.cme.msu.edu rdp.cme.msu.edu

Tree Builder - Start

http://rdp.cme.msu.edu/treebuilder/treeing.spr

Tree Builder - Start. Your seq cart contains 0 aligned sequences:. Select sequences for treeing using the Hierarchy Browser. Minimum comparable position is 200. This task will take between 6 seconds and 45 minutes depending on how many sequences were selected and server load (During peroids of extremely high server load, you may not be able to submit requests). 1992-2014 Michigan State University Board of Trustees, East Lansing MI 48824. MSU is an affirmative-action, equal-opportunity employer.

rdp.cme.msu.edu rdp.cme.msu.edu

Related Sites

http://rdp.cme.msu.edu/misc/related.jsp

Provides an updated database of gene homologs based on HMM/HMMER search of the GenBank nr database and includes both protein and DNA alignments. Integrated tools are provided for primer testing, phylogenetic analysis and model refinement. A comprehensive database containing published rRNA-targeted oligonucleotide probe sequences, DNA microarray layouts and associated information. probeBase. Can be searched for target organisms or probe names and is maintained by the Microbial Ecology Group. The Integrate...

rdp.cme.msu.edu rdp.cme.msu.edu

RDP MIMARKS GoogleSheet

http://rdp.cme.msu.edu/misc/googleSheetsHelp.jsp

RDP MIMARKS GoogleSheet - manage your metadata. RDP supports the Genomic Standards Consortium's M. Nformation about a MARK. Accepted 18 February 2011.]. More information can be found on the MIMARKS homepage. Where you can also find other projects promoting the MIMARKS standards like Terragenome (International Soil Metagenome Sequencing Consortium). RDP Support for Metadata Standards. RDP developed the MIMARKS GoogleSheet to help you manage the metatdata for your samples! Why a Google spreadsheet? Preconf...

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MKO - Hydro Quebec - Congrès mondial de l'énergie

MKO RÉALISE LA SOURCE D’ÉNERGIE D’HYDRO-QUÉBEC. Congrès Mondial de l’énergie, Palais des Congrès de Montréal, 12 au 16 septembre 2010. À titre de commanditaire hôte de cet événement, Hydro-Québec a retenu l'expertise de MKO pour la conception et la réalisation d'un espace immersif et interactif personnalisé: La Source d’Énergie. Diverses créations ont été mises au service de l’axe de communication :. De nombreux écrans tactiles permettaient de naviguer sur un micro site. Hydro-Québec, créateur de solutio...

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C.M.E. Home Page

cme.ms cme.ms

Welcome :: CME :: The Haley Barbour Center for Manufacturing Excellence

Haley Barbour Center for Manufacturing Excellence. The University of Mississippi has created the Haley Barbour Center for Manufacturing Excellence (CME) with the support of the State of Mississippi in association with the building of a new Toyota manufacturing plant near Blue Springs MS. The CME serves as an innovative resource for:. Undergraduate education in manufacturing for accounting, business,and engineering students,. Research support and cooperation,. CME in the Media. Manf 253: Strategic Planning.

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Delft University of Technology: Construction Management and Engineering

Construction Management and Engineering. Studying at TU Delft. The three leading universities of technology in the Netherlands Delft University of Technology, Eindhoven University of Technology and the University of Twente have joined forces in the 3TU Federation. This federation maximizes innovation by combining and concentrating the strengths of all three universities in research, education and knowledge transfer. The CME program is part of this 3TU collaboration. To find out more about the 3TU program.

cme.mssny.org cme.mssny.org

MSSNY - Continuing Medical Education

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The Center for Microbial Ecology

CME members and alumni at the 2011 Tiedje Symposium,. October 29th, East Lansing, Michigan. Visit the Tiedje Lab site. Workshop held on MSU campus, May 30th. Luis-Miguel Rodriguez-Rohas (Georgia Institute of Technology) presented MiGA (the Microbial Genome Atlas) to 15 participants with RDP staff assisting. MiGA. Visit the new SCFAdb ( S. This database performs best in Chrome. RDP (Ribosomal Database Project) - NEW RDP Release 11. Update 5 contains 3,356,809. Try our new Assignment Generator. For your cl...

cme.mums.ac.ir cme.mums.ac.ir

آموزش مداوم

دبیر خانه هیأت امنا. بازرسی، ارزیابی عملکرد و پاسخ گويی به شکایت ها. شورای امور بانوان دانشگاه. مديريت آمار و فناوری اطلاعات و ارتباطات. مديريت شاهد و امور ايثارگران. هيأت رسيدگی به تخلف های اداری. معاونت توسعه مديريت و منابع. معاونت دانشجويی - فرهنگی. دانشکدۀ پرستاری و مامایی. دانشكدۀ طب ایرانی و مکمل. بيمارستان تخصصی چشم خاتم الانبياء(ص). بيمارستان فوق تخصصی دكتر علی شريعتی. بيمارستان شهيد هاشمی نژاد. بیمارستان فوق تخصصی جراحی عروق علوی. مرکز آموزشی- پژوهشی و درمانی امام رضا(ع). مرکز رشد فناوری سلامت.

cme.ncu.edu.tw cme.ncu.edu.tw

國立中央大學化學工程與材料工程學系

201803.12 03.1. 201803.12 03.16 中研院永續能源前瞻領袖營 歡迎報名! 電子公布欄通知 公告主旨 惠請踴躍參與教育部補助本會委託國立臺灣大學辦理 準大學生先修課程聯合認證. ORIX 、 日立工機株式会社 、 日產自動車 0. ORIX 、 日立工機株式会社 、 日產自動車 03/17(六)、03/18(日)赴日職缺招募說明.

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多元教育文化中心

11/22 (三) 順勢而為、人我相遇的教育之路- 林曉妮老師. 11/22 (三) 順勢而為、人我相遇的教育之路- 林曉妮老師. 演講公告 找路 回家 轉向內解殖民作為返回部落的方向. 5/2 Namuan Multicultural Farming Field Trip 春天南安部落農事體驗與多元文化學習之旅. Dear all, Namuan Village is located within Zhuoxi Township in southern Hualien County. At the foot of Yushan, the highe. 貧富差距惡化與經濟衰退讓全球頭痛不已,特別是在經濟發展相對弱勢的花東地區,小老百姓能否互助合作, 自己的經濟自己救 發揮在地經濟潛力,打造自己的幸福產業 合作事業是一種強調民主參與、在地整合並兼顧合理分配的經濟體,深受聯合國及我國 憲法. 時間 2014年12月5日 星期五 19:00-21:00. 地點 花師教育學院 階梯教室 一 C128. 2014多元文化教育論壇 政治很髒嗎 當政治排除 眾人 社會學習論壇. 時間 10/29 三 晚上6:.

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IIS7

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Centre of Maritime Excellence Sdn Bhd

Centre of Maritime Excellence Sdn Bhd. CME Resources Sdn Bhd. CME Marine Sdn Bhd. Marine Services and Operations. STCW 1978 As Amended Courses. Shipping, Port and Oil and Gas Courses. Health, Safety and Environment (HSE) Courses. Recognised Security Organization (RSO). Ministry of Finance Malaysia. World Maritime Day 2015. Sabah Maritime Seminar 2013. Is an example of a. Caption with a link. Centre of Maritime Excellence Sdn. Bhd. As part of our excellence and continuous improvement process, we treat ISO...