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BORGES | ARCIMBOLDO

ARCIMBOLDO: Crystallographic Ab Initio protein solution below atomic resolution. More on ARCIMBOLDO LITE here. Ab Initio macromolecular phasing has been traditionally limited to small proteins at atomic resolution (1.2Å or better unless heavy atoms are present). ARCIMBOLDO constitutes a general method for 2Å data, based on combination of location of model fragments like small α-helices with PHASER. And density modification with SHELXE. Distributed over a grid of computers.

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BORGES | ARCIMBOLDO | chango.ibmb.csic.es Reviews
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ARCIMBOLDO: Crystallographic Ab Initio protein solution below atomic resolution. More on ARCIMBOLDO LITE here. Ab Initio macromolecular phasing has been traditionally limited to small proteins at atomic resolution (1.2&Aring or better unless heavy atoms are present). ARCIMBOLDO constitutes a general method for 2&Aring data, based on combination of location of model fragments like small α-helices with PHASER. And density modification with SHELXE. Distributed over a grid of computers.
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1 arcimboldo
2 lite
3 borges
4 shredder
5 documentation
6 manual
7 installation
8 recipes
9 tutorials
10 arcimboldo borges tutorial
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arcimboldo,lite,borges,shredder,documentation,manual,installation,recipes,tutorials,arcimboldo borges tutorial,arcimboldo lite tutorial,arcimboldo shredder tutorial,dna tutorial,coiled coil tutorial,download,check out arcimboldo,s youtube channel,here
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BORGES | ARCIMBOLDO | chango.ibmb.csic.es Reviews

https://chango.ibmb.csic.es

ARCIMBOLDO: Crystallographic Ab Initio protein solution below atomic resolution. More on ARCIMBOLDO LITE here. Ab Initio macromolecular phasing has been traditionally limited to small proteins at atomic resolution (1.2&Aring or better unless heavy atoms are present). ARCIMBOLDO constitutes a general method for 2&Aring data, based on combination of location of model fragments like small α-helices with PHASER. And density modification with SHELXE. Distributed over a grid of computers.

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chango.ibmb.csic.es chango.ibmb.csic.es
1

BORGES | Setup and Installation

http://chango.ibmb.csic.es/installation

ARCIMBOLDO was designed and developed to run on a local machine accessing a local or remote grid environment. However, the latest release includes the option of running the programs in multiprocessing on a single machine. When using a grid, the program will run on a local machine distributing computationally demanding jobs on the grid. Currently, we support Condor, SGE/Opengrid, MOAB and Torque. The documentation for the previous release and setup can be found in this pdf. Version 2.6.1 or newer. Scienti...

2

BORGES | DNA

http://chango.ibmb.csic.es/tutorial_dna

DNA Tutorial for Arcimboldo. Aims of the tutorial. This tutorial shows how to launch BORGES-ARCIMBOLDO in the particular case of DNA-binding protein libraries (Pröpper. 2014) In the present case a Zinc-finger library is used to phase the structure of the Krueppel-like factor 4 (Klf4) (Schuetz. 2011) that contains the Zinc-finger domain. This example uses the latest ARCIMBOLDO release, but the previous tutorial is accesible here. 1) Create a library of model templates. A classical ARCIMBOLDO approach usin...

3

BORGES

http://chango.ibmb.csic.es/BORGES

A program to retrieve local polypeptide folds and phase crystallographic structures at 2Å enforcing tertiary structure. Nature Milestones in Crystallography highlights the BORGES publication. Any unknown structure should contain fragments already seen in the PDB, but how to retrieve and exploit this information? Exploiting tertiary structure through local folds for crystallographic phasing. Nature Methods 10: 1099-1101 (2013) (doi:10.1038/nmeth.2644).

4

BORGES | Tutorial

http://chango.ibmb.csic.es/tutorial

Aims of the tutorial. In this tutorial, we will show how to launch ARCIMBOLDO BORGES in order to. 1 Create a library. 2 Use that library against experimental diffraction data to solve a structure and to analyze the resulting output. This example uses the latest ARCIMBOLDO BORGES release, but the previous tutorial is accesible here. Data tutorial: tutorial files. Step by Step tutorial. 1 Creation of a BORGES library. 2 Usage of the library against experimental data to solve the structure. The [CONNECTION]...

5

BORGES | Manual

http://chango.ibmb.csic.es/manual

The following documentation describes the current version of the programs. We encourage upgrade to the latest version as bugs have been corrected and new features are available. Moreover some dependencies have been eliminated. However, documentation for previous versions can be found on this pdf. An mtz file containing the reflection data. A SHELX reflection file hkl containing the reflection data. The configuration .bor file with the parameters for an ARCIMBOLDO run, which is defined as follows. These c...

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BORGES | ARCIMBOLDO

ARCIMBOLDO: Crystallographic Ab Initio protein solution below atomic resolution. More on ARCIMBOLDO LITE here. Ab Initio macromolecular phasing has been traditionally limited to small proteins at atomic resolution (1.2&Aring or better unless heavy atoms are present). ARCIMBOLDO constitutes a general method for 2&Aring data, based on combination of location of model fragments like small α-helices with PHASER. And density modification with SHELXE. Distributed over a grid of computers.

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