ceiba.biosci.arizona.edu

Sanderson Lab Home

Computational Biology, Phylogenetics and Plant Evolution. STBase (Down for repairs! Our research focuses on phylogenetic trees and comparative evolutionary biology, using the tools of computational biology. Current projects in the lab include development of algorithms and tools for assembling the tree of life, analysis of whole genome sequences to infer evolutionary relationships in Oryza. Department of Ecology and Evolutionary Biology. 1041 E. Lowell, Tucson, AZ 85721-0088.

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Sanderson Lab Home | ceiba.biosci.arizona.edu Reviews

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Computational Biology, Phylogenetics and Plant Evolution. STBase (Down for repairs! Our research focuses on phylogenetic trees and comparative evolutionary biology, using the tools of computational biology. Current projects in the lab include development of algorithms and tools for assembling the tree of life, analysis of whole genome sequences to infer evolutionary relationships in Oryza. Department of Ecology and Evolutionary Biology. 1041 E. Lowell, Tucson, AZ 85721-0088.

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1 u of a

2 university of arizona

3 mike sanderson's lab

4 people

5 research

6 databases

7 phylota

8 software

9 ceiba

10 terraphy

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Sanderson Lab Home | ceiba.biosci.arizona.edu Reviews

https://ceiba.biosci.arizona.edu

Computational Biology, Phylogenetics and Plant Evolution. STBase (Down for repairs! Our research focuses on phylogenetic trees and comparative evolutionary biology, using the tools of computational biology. Current projects in the lab include development of algorithms and tools for assembling the tree of life, analysis of whole genome sequences to infer evolutionary relationships in Oryza. Department of Ecology and Evolutionary Biology. 1041 E. Lowell, Tucson, AZ 85721-0088.

INTERNAL PAGES

ceiba.biosci.arizona.edu

1

Sanderson Lab People

http://ceiba.biosci.arizona.edu/people.html

Phylogenetics, Plant Systematics, and Computational Biology. Tree of Life - Phylota. Mike Sanderson, PI. Some former lab members. Department of Ecology and Evolutionary Biology. 1041 E. Lowell, Tucson, AZ 85721-0088. Phone: 520-626-6848 - FAX: 520-621-9190.

2

PhyLoTA Browser

http://ceiba.biosci.arizona.edu/pb

Index page for www.phylota.net # #. Browser (rel. 1.01). This database provides a snapshot of the current taxonomic distribution of nucleotide sequences in GenBank. Its purpose is to convey information about the potential phylogenetic data sets (. For more information on how the clustering was implemented click here. For a list of model organisms click here. Query with a taxon name or id number:. Quick links to specific nodes:. Types of sequences included:. GenBank release:159 (April 15, 2007). Total num...

3

r8s_home.htm

http://ceiba.biosci.arizona.edu/r8s/index.html

R8s version 1.8. Analysis of rates ("r8s") of evolution. Department of Ecology and Evolutionary Biology. May 16, 2012. In version 1.8 I have added ancestral state reconstruction and model testing for several markov models of morphological evolution (see below). The program reads "NEXUS" formatted data files (Maddison et al. 1997). What’s new in 1.8. B Marazzi et al., 2012). What’s new in 1.71. This version fixes some minor bugs and compilation problems on various platforms. What’s new in 1.70. When multi...

4

Mike Sanderson

http://ceiba.biosci.arizona.edu/sanderson.html

Michael J. Sanderson,. My research applies statistical and computational techniques to problems in phylogenetics and evolution. Until recently the empirical side of these studies focused on specific taxa: legumes (especially Astragalus.

5

Sanderson Pubs

http://ceiba.biosci.arizona.edu/SandersonPubs.html

Sanderson, M. J., M. M. McMahon and M. Steel. 2011. Terraces in phylogenetic tree space. Science, 333:448-450. Soltis, D.E., et al. 2011. Angiosperm phylogeny: 17-genes, 640 taxa. Amer. J. Bot. 98:704-730. Wertheim,J., M. J. Sanderson, M. Worobey and A. Bjork. 2010. Relaxed molecular clocks, the bias-variance tradeoff, and the quality of phylogenetic inference. Syst. Biol., 59:1-8. Sanderson, M. J. 2008. Phylogenetic signal in the eukaryotic tree of life. Science, 321:121-123. Kim, J., and M. J&#...Sande...

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Sanderson Lab Home

Computational Biology, Phylogenetics and Plant Evolution. STBase (Down for repairs! Our research focuses on phylogenetic trees and comparative evolutionary biology, using the tools of computational biology. Current projects in the lab include development of algorithms and tools for assembling the tree of life, analysis of whole genome sequences to infer evolutionary relationships in Oryza. Department of Ecology and Evolutionary Biology. 1041 E. Lowell, Tucson, AZ 85721-0088.

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