aida.godziklab.org

AIDA

Announcement(09-12-2016): Recently a few jobs were terminated due to a server problem. Now the problem is fixed, please resubmit your jobs. For users who submitted jobs with emails, your jobs were resubmitted and you will receive the result by email once the job is finished. Sorry for the inconvenience! The structures themselves are kept rigid during the energy minimization simulation, treating only the link regions as completely flexible. 1) Please paste the full amino-acid sequence in fasta format.

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AIDA | aida.godziklab.org Reviews

<META> DESCRIPTION

Announcement(09-12-2016): Recently a few jobs were terminated due to a server problem. Now the problem is fixed, please resubmit your jobs. For users who submitted jobs with emails, your jobs were resubmitted and you will receive the result by email once the job is finished. Sorry for the inconvenience! The structures themselves are kept rigid during the energy minimization simulation, treating only the link regions as completely flexible. 1) Please paste the full amino-acid sequence in fasta format.

<META> KEYWORDS

1 nitio

2 omain a

3 ssembly server

4 domains

5 ffas 3d

6 sample input

7 pmodel2 pdb

8 pmodeln pdb

9 download the package

10 pmodel3 pdb

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nitio,omain a,ssembly server,domains,ffas 3d,sample input,pmodel2 pdb,pmodeln pdb,download the package,pmodel3 pdb,constitute a discontinuous,domain,explanation,click help page,click example1,click example2,click example3,click example4,click example5

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AIDA | aida.godziklab.org Reviews

https://aida.godziklab.org

Announcement(09-12-2016): Recently a few jobs were terminated due to a server problem. Now the problem is fixed, please resubmit your jobs. For users who submitted jobs with emails, your jobs were resubmitted and you will receive the result by email once the job is finished. Sorry for the inconvenience! The structures themselves are kept rigid during the energy minimization simulation, treating only the link regions as completely flexible. 1) Please paste the full amino-acid sequence in fasta format.

INTERNAL PAGES

aida.godziklab.org

1

AIDA

http://aida.godziklab.org/2013.May.18.32034

Automated Multiple-Domain Protein Structure Prediction by FFAS-3D and AIDA. Click 2013.May.18.32034.tar.gz. To download the assembly result and individual domain structures. 2 Domain Structures on the 1st Level.

2

AIDA

http://aida.godziklab.org/2013.May.09.16058

3

AIDA

http://aida.godziklab.org/2013.May.09.21943

4

AIDA

http://aida.godziklab.org/2013.May.17.28059

Single-Domain Protein Structure Prediction Result by FFAS-3D. 10- - - - 20- - - - 30- - - - 40- - - - 50- - - - 60- - - - 70- - - - 80- - - - 90- - - -100- - - -110- - - -120- - - -130- - - -140- - - -150- - - -160- - - -170- - - -180- - - -190- - - -200- - - -210- - - -220- -. GGNYKPLDGLEISLYGSHFQDVWNQYYLGVTENGIALRTAFNGYHTGDTGAREAGYIDNDTWSLAFTLGHRAHALTLAYQQVDGNSAQIRYETDWSYYGVPGLSTGVWYVKGWDIDGTHYDGDRNGAYGNYAEVRAQDGEKHHEL-GLMAAYKVQN- -GPIKDSTFKLTYMM- - - - -HKASQNQIDGS- - - - - - -VNELRLVSTFPF.

5

help page

http://aida.godziklab.org/help.html

AIDA Server Help Page. 1 How can this server help you? If you have domain structures and don't know how they should be arranged. If you only have the sequence and don't have any information on domain numbers and boundaries. 2 Regarding the input fasta sequence:. Submit one sequence at a time. AIDA itself has no limit regarding the maximum sequence length. It does, however, rely on PSIPRED's secondary structure prediction result which is limited to sequence of 10,000 residues or less. The first and third ...

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bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/servers.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Bioinformatics Web Servers and Databases. Is a new, updated and maintained version of the F. Server is a pairwise flexible protein structure alignment server. See Bioinformatics, 2003, 19(Suppl 2):II246-II255. And Nucleic Acids Res. 2014 May 16. pii: gku394. Is a database that explores the intrinsic flexibil...

bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/publication.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Porta-Pardo E, Godzik A. Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. PubMed. Thomas Hrabe, Lukasz Jaroszewski and Adam Godzik. Revealing aperiodic aspects of solenoid proteins from sequence information. Bioinformatics. 2016 Jun 9. PubMed. AIDA: ab initio domain ass...

bioinformatics.sanfordburnham.org

Godzik Lab Website

http://bioinformatics.sanfordburnham.org/pages/index.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Physicists, biologists and computer scientists meet together to understand proteins. If you want to know more about what (and how and why) we do, read on. See our new paper. Porta-Pardo E, Godzik A., Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. A user-driven, intera...

godziklab.org

Godzik Lab Website

http://www.godziklab.org/pages/index.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Physicists, biologists and computer scientists meet together to understand proteins. If you want to know more about what (and how and why) we do, read on. See our new paper. Porta-Pardo E, Godzik A., Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. A user-driven, intera...

bioinformatics.burnham.org

Godzik Lab Website

http://bioinformatics.burnham.org/pages/people.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. People In Godzik Lab. Sorted by Last Name. Adam Godzik, Ph.D. Bioinformatics and Systems Biology. Professor, PI, Program Director. Tel: 858-646-3100 x 3168. Tel: 858-646-3100 ext 3790. Yuanyuan Chang, Ph.D. Tel: 858-646-3100 ext 4146. Piotr Cieplak, Ph.D. Research Ass. Professor. Tel: 858-646-3100 ext 3076.

bioinformatics.burnham.org

Godzik Lab Website

http://bioinformatics.burnham.org/pages/publication.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Porta-Pardo E, Godzik A. Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. PubMed. Thomas Hrabe, Lukasz Jaroszewski and Adam Godzik. Revealing aperiodic aspects of solenoid proteins from sequence information. Bioinformatics. 2016 Jun 9. PubMed. AIDA: ab initio domain ass...

bioinformatics.burnham.org

Godzik Lab Website

http://bioinformatics.burnham.org/pages/servers.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Bioinformatics Web Servers and Databases. Is a new, updated and maintained version of the F. Server is a pairwise flexible protein structure alignment server. See Bioinformatics, 2003, 19(Suppl 2):II246-II255. And Nucleic Acids Res. 2014 May 16. pii: gku394. Is a database that explores the intrinsic flexibil...

bioinformatics.burnham.org

Godzik Lab Website

http://bioinformatics.burnham.org/pages/index.html

Bioinformatics and System Biology. BNAber: database of broadly neutralizing HIV antibodies. Our Institute is retiring the following domains in web and email:. Please replace them by sbpdiscovery.org. Physicists, biologists and computer scientists meet together to understand proteins. If you want to know more about what (and how and why) we do, read on. See our new paper. Porta-Pardo E, Godzik A., Mutation drivers of immunological responses to cancer. Cancer Immunol Res. 2016 Jul 11. A user-driven, intera...

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Announcement(09-12-2016): Recently a few jobs were terminated due to a server problem. Now the problem is fixed, please resubmit your jobs. For users who submitted jobs with emails, your jobs were resubmitted and you will receive the result by email once the job is finished. Sorry for the inconvenience! The structures themselves are kept rigid during the energy minimization simulation, treating only the link regions as completely flexible. 1) Please paste the full amino-acid sequence in fasta format.

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