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AEGeAn Toolkit: integrated genome analysis — AEGeAn documentation

Loci as a Coordinate System. AEGeAn Toolkit: integrated genome analysis. AEGeAn Toolkit: integrated genome analysis. Daniel S. Standage. Loci as a Coordinate System. If you’re in a hurry, check out the. Installation demo for the impatient. Is a program for comparing distinct sets of gene structure annotations for the same sequence(s). This program calculates and reports a rich set of comparison statistics, both at the level of individual gene loci as well as at the level of entire sequences. Additional t...

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AEGeAn Toolkit: integrated genome analysis — AEGeAn documentation | aegean.readthedocs.io Reviews

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Loci as a Coordinate System. AEGeAn Toolkit: integrated genome analysis. AEGeAn Toolkit: integrated genome analysis. Daniel S. Standage. Loci as a Coordinate System. If you’re in a hurry, check out the. Installation demo for the impatient. Is a program for comparing distinct sets of gene structure annotations for the same sequence(s). This program calculates and reports a rich set of comparison statistics, both at the level of individual gene loci as well as at the level of entire sequences. Additional t...

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2 installing aegean

3 notes on gff3

4 parseval

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6 locuspocus

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AEGeAn Toolkit: integrated genome analysis — AEGeAn documentation | aegean.readthedocs.io Reviews

https://aegean.readthedocs.io

Loci as a Coordinate System. AEGeAn Toolkit: integrated genome analysis. AEGeAn Toolkit: integrated genome analysis. Daniel S. Standage. Loci as a Coordinate System. If you’re in a hurry, check out the. Installation demo for the impatient. Is a program for comparing distinct sets of gene structure annotations for the same sequence(s). This program calculates and reports a rich set of comparison statistics, both at the level of individual gene loci as well as at the level of entire sequences. Additional t...

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aegean.readthedocs.io

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Contributors — AEGeAn documentation

http://aegean.readthedocs.io/en/v0.16.0/contrib.html

Loci as a Coordinate System. The following assisted in the development of the AEGeAn Toolkit and/or contributed to its code base. Daniel S. Standage daniel . Volker Brendel vbrendel @. Intellectual development, supervision, and testing. Sascha Steinbiss steinbiss @. And Gordon Gremme gordon @. Integration with GenomeTools, including code examples and implementing feature requests. James Denton jfdenton @. Provided by Read the Docs. On Read the Docs. Free document hosting provided by Read the Docs.

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AEGeAn Toolkit: integrated genome analysis — AEGeAn documentation

http://aegean.readthedocs.io/en/v0.14.0

Loci as a Coordinate System. AEGeAn Toolkit: integrated genome analysis. AEGeAn Toolkit: integrated genome analysis. Daniel S. Standage. Loci as a Coordinate System. If you’re in a hurry, check out the. Installation demo for the impatient. Is a program for comparing distinct sets of gene structure annotations for the same sequence(s). This program calculates and reports a rich set of comparison statistics, both at the level of individual gene loci as well as at the level of entire sequences. Additional t...

3

ParsEval — AEGeAn documentation

http://aegean.readthedocs.io/en/v0.16.0/parseval.html

Loci as a Coordinate System. Is a program for comparing two sets of gene annotations for the same sequence. The most common use cases for ParsEval are as follows. You are annotating a newly assembled genome. The optimal parameter settings for annotation are not clear initially, so you do some exploratory data analysis and try several different parameter settings. You can use ParsEval to identify the similarities and differences between the different annotations you have produced. ParsEval will infer feat...

4

AEGeAn Toolkit: integrated genome analysis — AEGeAn documentation

http://aegean.readthedocs.io/en/v0.13.0

Compiling without administrative privileges. AEGeAn’s preferred exchange format. Loci as a Coordinate System. AEGeAn Toolkit: integrated genome analysis. AEGeAn Toolkit: integrated genome analysis. Daniel S. Standage. Loci as a Coordinate System. If you’re in a hurry, check out the. Installation demo for the impatient. Is a tool for preprocessing GFF3 data. It validates features related to canonical protein-coding genes, accepting data encoded in a wide variety of common conventions. Is a program for com...

5

AEGeAn Toolkit: integrated genome analysis — AEGeAn documentation

http://aegean.readthedocs.io/en/v0.15.1

Loci as a Coordinate System. AEGeAn Toolkit: integrated genome analysis. AEGeAn Toolkit: integrated genome analysis. Daniel S. Standage. Loci as a Coordinate System. If you’re in a hurry, check out the. Installation demo for the impatient. Is a program for comparing distinct sets of gene structure annotations for the same sequence(s). This program calculates and reports a rich set of comparison statistics, both at the level of individual gene loci as well as at the level of entire sequences. Additional t...

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brendelgroup.github.io

AEGeAn Toolkit

https://brendelgroup.github.io/AEGeAn

AEGeAn source code on GitHub. Integrated genome analysis toolkit. The AEGeAn Toolkit is designed for the A. Notations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures. AEGeAn is free to use and is released under an unrestrictive open source license. Daniel S. Standage and Volker P. Brendel (2012) ParsEval: parallel comparison and analysis of gene structure annotations. 187, doi:10.1186/1471-2105-13-187.

standage.github.io

AEGeAn Toolkit

http://standage.github.io/AEGeAn

AEGeAn source code on GitHub. Integrated genome analysis toolkit. The AEGeAn Toolkit is designed for the A. Notations. The toolkit includes a variety of analysis programs as well as a C library whose API provides access to AEGeAn's core functions and data structures. AEGeAn is free to use and is released under an unrestrictive open source license. Daniel S. Standage and Volker P. Brendel (2012) ParsEval: parallel comparison and analysis of gene structure annotations. 187, doi:10.1186/1471-2105-13-187.

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AEGeAn Toolkit: integrated genome analysis — AEGeAn documentation

Loci as a Coordinate System. AEGeAn Toolkit: integrated genome analysis. AEGeAn Toolkit: integrated genome analysis. Daniel S. Standage. Loci as a Coordinate System. If you’re in a hurry, check out the. Installation demo for the impatient. Is a program for comparing distinct sets of gene structure annotations for the same sequence(s). This program calculates and reports a rich set of comparison statistics, both at the level of individual gene loci as well as at the level of entire sequences. Additional t...

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